PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_112.46
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 458aa    MW: 50539.8 Da    PI: 9.378
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_112.46genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012154177123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   ++C+ Cg++F  +++L++H+   H
  evm.model.supercontig_112.46 154 FPCTACGEVFQKSHLLEQHQTIkH 177
                                   89******************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.159154182IPR007087Zinc finger, C2H2
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-10179380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAANNKHFGS VFSKFLSLFL LLLHLGCFIF SAKNQDPHQP SKKRKVSHLS PSSSSSSSRL  60
KPHRALSSSW SYLKRVFSSS RSCKNSSQLH AIAPVLTSAR SSQQSLVSMV APEKTHVSDL  120
NTVPTPPLKK PTGSCPESDI SADTQFLPLR NDIFPCTACG EVFQKSHLLE QHQTIKHAVS  180
ELIDGDSGKN IVQIIFKTGW TNKTRDPEIH RILKIHNSSK ILARFEEYRE FVKAKAARNG  240
AVKRRDERCI ADGNELLRFY CSTFMCDLGL NGNSTICNQQ YCSICGIIKS GFSPKLDGIS  300
TLSTGWRAHV AIPEDIEEEF GFMNVKRAML ICRVIAGRVG SEIDDVDKDD GGYDSVVGRG  360
TTCGMGHMRM DEEELLVFNP RAVGGFNHAD VMSCFPRGKR AFSAMHLIPV SSFIRHGRQP  420
PSDSSPPPLS PFSAIVDLEP VVGHRRIGRS PSVIFHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_112.46
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891727.10.0uncharacterized protein LOC110810008
TrEMBLB9GIT80.0B9GIT8_POPTR; C2H2 family protein
STRINGevm.model.supercontig_112.460.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-111C2H2 family protein