PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_111.55 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28939.7 Da PI: 8.6747 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 8 | 28 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+++F + + H+r+H evm.model.supercontig_111.55 8 CKICNRRFANGKAMGGHMRSH 28 *******************99 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.2e-05 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H evm.model.supercontig_111.55 153 FRCETCKKRFTSYQALAGHRASH 175 89*****************9998 PP | |||||||
3 | zf-C2H2 | 14.3 | 0.00012 | 198 | 220 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C+k+F++ L H ++H evm.model.supercontig_111.55 198 FKCPLCSKVFKSGQALGGHKKVH 220 89************999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.265 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-7 | 7 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.866 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.67E-10 | 153 | 220 | No hit | No description |
Pfam | PF13912 | 9.8E-9 | 153 | 176 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 198 | 220 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-10 | 198 | 220 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0082 | 198 | 220 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 200 | 220 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDKQQRICKI CNRRFANGKA MGGHMRSHFC KLPIPPKPKP TNHGGPKPPS SSSSVLSFPV 60 DRQSDTESPR NPTRRRSKRL RKSVSKLVQS LLGRESVSSV SQTFSDIEEV AMCLLMLSKD 120 KWVEEEVDDE DDDDVDDGDD DGYESSCVNG VKFRCETCKK RFTSYQALAG HRASHKNKNK 180 KVQKEEKMNV NGEGKKLFKC PLCSKVFKSG QALGGHKKVH FSYLNISKSC NHDDHDEVSQ 240 VELSSICNTD MCDPVNTP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_111.55 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021891854.1 | 1e-176 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A2I4G876 | 5e-56 | A0A2I4G876_JUGRE; zinc finger protein ZAT4-like | ||||
STRING | evm.model.supercontig_111.55 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16232 | 8 | 14 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 3e-25 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_111.55 |