PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_11.127

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Trihelix

Protein Properties

Length: 286aa MW: 34058.5 Da PI: 9.4042

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_11.127	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.4	1.2e-25	43	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W+ qe+++ + +r e+++++ ++k++k lWe +s+km+e+g++rs++qCk+kw+nl +ryk ++++e + +++++p+ evm.model.supercontig_11.127 43 QWSTQETKEFLMIRAELDQTFMETKRNKILWEVISSKMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEAEA---VRQQFPF 120 7******************************************************************85...77899 PP trihelix 82 fdqle 86 +++l+ evm.model.supercontig_11.127 121 YNELQ 125 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.619	36	100	IPR017877	Myb-like domain
SMART	SM00717	5.3E-5	40	102	IPR001005	SANT/Myb domain
CDD	cd12203	2.56E-24	42	107	No hit	No description
Pfam	PF13837	1.3E-20	43	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEGHHHHHPH HHHQHQHLHQ PQHHLQPQHH IPVNVEPADR FPQWSTQETK EFLMIRAELD 60 QTFMETKRNK ILWEVISSKM KEKGYNRSAE QCKCKWKNLV TRYKGCETME AEAVRQQFPF 120 YNELQAIFAG RMHRMLWAEA EGGGASGSKK KAVQLSSDEE DQEESEGDQN TRKKKKKGRG 180 SSSSVGISSN RSSGNMREIL EEFMKQQMQI EMEWREAFEA REKERKMKEM EWRQMMEALE 240 KERVVMDRRW REREEQRRIR EEARAEKRDA LITALLHKLT RQGSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-12	40	104	3	67	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_11.127

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021906296.1	0.0	trihelix transcription factor GT-3b
Swissprot	O80450	3e-76	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A1U8ACN0	1e-117	A0A1U8ACN0_NELNU; trihelix transcription factor GT-3b-like isoform X2
TrEMBL	A0A1U8Q5U9	1e-117	A0A1U8Q5U9_NELNU; trihelix transcription factor GT-3b-like isoform X1
STRING	evm.model.supercontig_11.127	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_11.127

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]