PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_104.98
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 260aa    MW: 29608.3 Da    PI: 8.7424
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_104.98genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.71.3e-4151392128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrkn 75 
                                   ppGfrF Pt+eelv++yL++k+eg++      +++vi+ vdiy ++P++Lp+   ++  +++ew+fF++ ++++a+g r++
  evm.model.supercontig_104.98   5 PPGFRFYPTEEELVSFYLRNKIEGRRgdlnRLIDQVIPVVDIYAYKPSELPRfsgNLCRKDSEWFFFVPMQESEARGGRPR 85 
                                   9*************************7764333457***************54554455889******************* PP

                           NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   r t++gyWkatg+   v+s+ +g+l+g k+t+vfy+g+ap+g+kt+W m+ey+l
  evm.model.supercontig_104.98  86 RLTSTGYWKATGTPGFVYSSsTGRLIGGKRTMVFYNGKAPRGRKTEWKMNEYKL 139
                                   ******************9878899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-463181IPR003441NAC domain
PROSITE profilePS5100547.5584181IPR003441NAC domain
PfamPF023652.2E-225139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEDWPPGFRF YPTEEELVSF YLRNKIEGRR GDLNRLIDQV IPVVDIYAYK PSELPRFSGN  60
LCRKDSEWFF FVPMQESEAR GGRPRRLTST GYWKATGTPG FVYSSSTGRL IGGKRTMVFY  120
NGKAPRGRKT EWKMNEYKLA VEAADHHHQP GSASQPTAST STGLPRMTLM QEFSLCRVYK  180
KSKCLRSFDR RPTSALIIQR PMPDQQTDSF NLSYGQMASS ASNQNPNQSA ETSDSQVMGI  240
DDLDWEQLAN LELTDWPFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-31518118165NO APICAL MERISTEM PROTEIN
1ut4_B4e-31518118165NO APICAL MERISTEM PROTEIN
1ut7_A4e-31518118165NO APICAL MERISTEM PROTEIN
1ut7_B4e-31518118165NO APICAL MERISTEM PROTEIN
4dul_A4e-31518118165NAC domain-containing protein 19
4dul_B4e-31518118165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_104.98
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892503.10.0NAC domain-containing protein 90-like
TrEMBLM5VSR51e-95M5VSR5_PRUPE; Uncharacterized protein
STRINGevm.model.supercontig_104.980.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-66NAC domain containing protein 90