PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_10.105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 24600.2 Da PI: 8.2684 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H evm.model.supercontig_10.105 75 FSCNFCHRKFYSSQALGGHQNAH 97 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-6 | 72 | 102 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MADTETNQRT KQLPHEEDDA VNEEADLKLD LSLYSSKEYS SQELNLIDSF DHQDKNFSET 60 PPHDQDNQTA EPRVFSCNFC HRKFYSSQAL GGHQNAHKRE RTLAKRGGNR VTGAAGFSFG 120 NPNSYSILPL HGSLGIQLHS VIHKPSFSSS TFTVAWPSTA RPPATGRLGN LQNIVPSTAR 180 FRRSLNGFSS GTEIIGGYRW DNHLKTKQDE LKKLDLSLKL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_10.105 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906522.1 | 1e-164 | zinc finger protein 1 | ||||
TrEMBL | A0A2I4GYX2 | 1e-48 | A0A2I4GYX2_JUGRE; zinc finger protein 1-like | ||||
STRING | evm.model.supercontig_10.105 | 1e-164 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1893 | 27 | 71 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 2e-31 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_10.105 |