PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.141
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 408aa    MW: 46558.1 Da    PI: 7.6788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.141genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.39.8e-43421692128
                          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgy 82 
                                  p GfrF+P+d elv+ yL +kv + +++  + i++v+iy+++P dL + +k+ +e+ewyfF++rdkky++g+r++r + +gy
  evm.model.supercontig_1.141  42 PTGFRFRPKDRELVDAYLMRKVLNLPMHR-SNIADVNIYDYNPFDLAEIFKEcGEREWYFFTPRDKKYPNGSRPSRRAGNGY 122
                                  89************************999.77**************8544444889************************** PP

                          NAM  83 WkatgkdkevlskkgelvglkktLvfykgra.pkgektdWvmheyrl 128
                                  Wkatg dk++ + ++ ++  +k+Lvfy g+  ++g kt+W+mheyrl
  evm.model.supercontig_1.141 123 WKATGGDKDIRNDNDDVIAKRKVLVFYMGKPmKSGGKTNWIMHEYRL 169
                                  ************999************996526789*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5038196IPR003441NAC domain
PROSITE profilePS5100551.98741196IPR003441NAC domain
PfamPF023652.1E-2342169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDIPNQIQGP SSSTTLRRLT AHHGASSSVN RDDQRYEFGS FPTGFRFRPK DRELVDAYLM  60
RKVLNLPMHR SNIADVNIYD YNPFDLAEIF KECGEREWYF FTPRDKKYPN GSRPSRRAGN  120
GYWKATGGDK DIRNDNDDVI AKRKVLVFYM GKPMKSGGKT NWIMHEYRLC NSPAPTRQGH  180
NNMRLDDWVL CRIYQKIRQN TRARNRENEE DENENENENP RGREEKGDQR LIEVQISNPA  240
PLDHQLRTFN IHGQVLGLPP PPPPPPPPPP LPPLYNNYQD MNNNGINNFN GGQYLLQQPQ  300
MLPFAFRPPV VVPIAMMPAA PTPAPTMEAP QIPAQEIEVP DNIFATQFYL ENPGLFSSLN  360
FQDNDWIFSN GDSGNVHSDF SYMHNSRDNI SNRFPSSAPG SSPRLGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-474019616165NO APICAL MERISTEM PROTEIN
1ut4_B8e-474019616165NO APICAL MERISTEM PROTEIN
1ut7_A8e-474019616165NO APICAL MERISTEM PROTEIN
1ut7_B8e-474019616165NO APICAL MERISTEM PROTEIN
4dul_A8e-474019616165NAC domain-containing protein 19
4dul_B8e-474019616165NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.141
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910189.10.0NAC transcription factor NAM-B1-like
STRINGevm.model.supercontig_1.1410.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-52NAC family protein