PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_0.12
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 333aa    MW: 36395.9 Da    PI: 9.1261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_0.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-11143169127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 yk e+Cr +   G+C++G++C+FaHg+
  evm.model.supercontig_0.12 143 YKVEICRAWEDLGHCRFGSKCQFAHGK 169
                                 9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-14138173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.53E-9140173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882142170IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7142169IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8143169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDSFYNKKNP EIPKQTNLNA NVLPLMIPRA RFHHPQSISS INSYSPDNLT KADSSILKYF  60
RSNSPAAASP VPVKFQFSGG PSGRRSSLSP LSAVENLEAV DGILVASVAS GRRVSRSGAD  120
SGFCGPESPL SSMPSSSTNS VLYKVEICRA WEDLGHCRFG SKCQFAHGKE ELHPSRFASR  180
NKSEAHLYKS FPGSGPYTYS TKSSFPQQAV AEVAVSLNEL TSHLKPEPSS KSRATSIKFD  240
HTGKSSISIS EFKDIRKMLS STLSSPLNCP LGSKNTNITV RYWSPQDDDI EVTLPDHAEN  300
SQSKEYIDAH IHNVLYGPSK RRLPVFIEIC PE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_0.12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910658.10.0mRNA decay activator protein ZFP36L2-like isoform X1
STRINGevm.model.supercontig_0.120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15770815
Representative plantOGRP1212144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-07C3H family protein