PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_42460.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 387aa    MW: 42318.2 Da    PI: 6.4457
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_42460.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08175195526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C+ff++ G+C  G++C+F H+
  evm.TU.contig_42460.1 175 ICNFFSK-GWCIKGSSCRFLHV 195
                            6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.615170197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043170196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6170194IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5175195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4175195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDYTADEANL GSGCSEVEEP KKKSPLNCHH NCSGISDEQS TTQKKSGLNV ENSNYPTLER  60
VLDLPEENDP SMKSIEDNGS IREKSSPKLH SDNDVHNVVN TNLSTVIGKD VAPSIPSRDE  120
FHRVSSNVLG YVDKQSEINT ENDKKRKESS SLEITAGSLS PNSEIKDANK RRALICNFFS  180
KGWCIKGSSC RFLHVKDHGS SNSQQSGVDT AANGKGQTQL DEGKILITDL KESERLNQLQ  240
DSIKSKGVPF GLPSDPQQVS PIKDSILLPN KCSSSIFKNN LLPEWRCSSS GSVLSSSNYH  300
NRNPSSYASN FEELSGIRNN YVDHSSPVSS HFLNSSLSSA LPPTVVLPSH HNSEWIQSSS  360
FSSLSMNASH LGAQKQLDNN KDYNASX
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_42460.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910901.10.0protein FRIGIDA-ESSENTIAL 1-like, partial
STRINGevm.TU.contig_42460.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Representative plantOGRP728179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-12C3H family protein