PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_41482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C3H | ||||||||
Protein Properties | Length: 255aa MW: 29033.9 Da PI: 7.7539 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.9e-09 | 87 | 111 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f++ G C+ G++C+FaHg evm.TU.contig_41482.1 87 FKTRVCAKFRA-GNCRNGENCNFAHG 111 69*********.*************9 PP | |||||||
2 | zf-CCCH | 27.7 | 4.5e-09 | 149 | 171 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yG+rC+F H evm.TU.contig_41482.1 149 MKLCKKFYNGEECPYGERCNFLH 171 689******66************ PP | |||||||
3 | zf-CCCH | 34.9 | 2.6e-11 | 227 | 253 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + t +C++ d+C+FaHg+ evm.TU.contig_41482.1 227 WKTKLCTKWETTSHCPFSDKCHFAHGQ 253 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-14 | 84 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-8 | 85 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-6 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-7 | 87 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-7 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 149 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-8 | 149 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-8 | 222 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-13 | 222 | 253 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 226 | 254 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 227 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSYSDSHPSI MQTPFNGGGS DAIGIWPQYP MSNESFDLHT QFDQQQQPPP FKRSRHEDNQ 60 SSSSPYQSNS RTPINPPVNK GTSNIFFKTR VCAKFRAGNC RNGENCNFAH GVEDLRQPPP 120 NWQELVGARG DEERSSGNWE DDQRIIHRMK LCKKFYNGEE CPYGERCNFL HEDPAKFRDD 180 NRFRESSAIS IGTTPPPVVH GSGGTQSEVN RSANNNNMMM MMKPVYWKTK LCTKWETTSH 240 CPFSDKCHFA HGQAX |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_41482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910943.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like, partial | ||||
Swissprot | Q9LT81 | 9e-79 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A251JD93 | 1e-118 | A0A251JD93_MANES; Uncharacterized protein | ||||
STRING | evm.TU.contig_41482.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10066 | 25 | 36 | Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 5e-77 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_41482.1 |