PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_38280.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

NAC

Protein Properties

Length: 313aa MW: 35796.3 Da PI: 4.3176

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_38280.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	65.7	1.4e-20	6	122	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 Gf+F P+deel + L+ +++g+ e+ ++ e+d y+ ePw k+e + y F++ +kk + +r +r++ g+Wk + evm.TU.contig_38280.1 6 IGFHFTPSDEELF-QILAMELRGEY-EV-GAVIEADPYEKEPWLVF-D-KNEPTTFYVFTSLKKK--SRSRMERKVGCGTWKMERSA- 85 6*********9.78999999988.55.578899****995.2.2344455666666665..568********88775. PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ev++ +++++g kk+L+f ++++++e+ +W+mhey+l evm.TU.contig_38280.1 86 EVVDWEENVIGFKKMLTFE-EKKKNTENGRWIMHEYSL 122 55555999******8.5666779*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.485	4	136	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-24	6	136	IPR003441	NAC domain
Pfam	PF02365	3.5E-14	6	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDVERIGFHF TPSDEELFQI LAMELRGEYE VGAVIEADPY EKEPWLVFDK NEPTTFYVFT 60 SLKKKSRSRM ERKVGCGTWK MERSAEVVDW EENVIGFKKM LTFEEKKKNT ENGRWIMHEY 120 SLRDFDDYVL CKIRNKSIDK LQQPTKIKLA YHQQDNSNNT YKRKLSADTE DHNQNKIQCI 180 NSSFVMSTTG DVRIVEEMII TAPLAAGDIN PFTAAALLAT EYNNRELVEE MTVVEPLASE 240 DINSLATVAP LTTEYNDREV VEEMTITAPL VARDINPLAT AIPLAAEYND GEIAEEMTVA 300 APLQDEVEQN DNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-12	7	136	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-12	7	136	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-12	7	136	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-12	7	136	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-12	7	136	23	168	NAC domain-containing protein 19
3swm_B	1e-12	7	136	23	168	NAC domain-containing protein 19
3swm_C	1e-12	7	136	23	168	NAC domain-containing protein 19
3swm_D	1e-12	7	136	23	168	NAC domain-containing protein 19
3swp_A	1e-12	7	136	23	168	NAC domain-containing protein 19
3swp_B	1e-12	7	136	23	168	NAC domain-containing protein 19
3swp_C	1e-12	7	136	23	168	NAC domain-containing protein 19
3swp_D	1e-12	7	136	23	168	NAC domain-containing protein 19
4dul_A	1e-12	7	136	20	165	NAC domain-containing protein 19
4dul_B	1e-12	7	136	20	165	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_38280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021911077.1	0.0	NAC domain-containing protein 55-like, partial
STRING	evm.TU.contig_38280.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5881	2	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	2e-14	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	evm.TU.contig_38280.1