PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_32800.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family E2F/DP
Protein Properties Length: 315aa    MW: 35245.4 Da    PI: 9.4714
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_32800.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.63.6e-2297175571
                E2F_TDP   5 sLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                            +Lr+++     ++++ e+ g++t++eva+e+v+e               ++kn+rRR+YD+lNVL+al++i++ +k+ei wkg
  evm.TU.contig_32800.1  97 GLRQFSVL---VCKTLETkGTTTYSEVADEIVAEfaaiqsnaaasseefNEKNIRRRVYDALNVLMALDIITR-DKKEICWKG 175
                            89999999...9***9999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3593179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.0E-2693175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-1997175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-1797176IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.03E-33182283IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.37E-37182296No hitNo description
SMARTSM011381.1E-46182312IPR014889Transcription factor DP, C-terminal
PfamPF087818.8E-34183292IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MASKYLDKTQ LSEQCPFGSS KSPRQASSSE STPVLNKMAV LNHGRDNTDV SNRCLYLRTI  60
FSFFLVFPVF PSNGKISLFL PKRSSANKKK VSRVIGGLRQ FSVLVCKTLE TKGTTTYSEV  120
ADEIVAEFAA IQSNAAASSE EFNEKNIRRR VYDALNVLMA LDIITRDKKE ICWKGLPTIC  180
TKDLEEMKKQ RAKLITSIVK KTAYLKDLEE QIAGIQNLIL RNHQLLKSNK APAEGFTLPF  240
ILVQTSPHAS VEIEISEDMQ LVHFDFNSTP FALHDDSYIL KLMQNYQHPQ RSSSRSSSSS  300
CIASGGTNYE KDIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-28971781191PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_32800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911490.10.0transcription factor-like protein DPA isoform X1
SwissprotQ9FNY33e-90DPA_ARATH; Transcription factor-like protein DPA
TrEMBLF6HLD51e-110F6HLD5_VITVI; Uncharacterized protein
STRINGevm.TU.contig_32800.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.32e-92Transcription factor DP