PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_30289.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 333aa    MW: 37652.1 Da    PI: 5.2138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_30289.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.3e-183885148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  evm.TU.contig_30289.2 38 RGPWTVEEDFKLINYIASHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 85
                           89********************************************97 PP
2Myb_DNA-binding51.22.9e-1691134146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  evm.TU.contig_30289.2  91 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 134
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.383389IPR017930Myb domain
SuperFamilySSF466891.45E-3036132IPR009057Homeodomain-like
SMARTSM007179.7E-163787IPR001005SANT/Myb domain
PfamPF002491.3E-163885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-223992IPR009057Homeodomain-like
CDDcd001679.84E-134085No hitNo description
SMARTSM007171.3E-1490138IPR001005SANT/Myb domain
PROSITE profilePS5129418.70790140IPR017930Myb domain
PfamPF002495.7E-1591134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2393139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEIVEGFCNS NNNNKTITGI NHDDQDDDHQ EDMEELRRGP WTVEEDFKLI NYIASHGEGR  60
WNSLARCAGL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQHL  120
PGRTDNEIKN YWRTRVQKHA KQLKCDVNSK QFKDTMRYLW MPRLVERIQA AAAATGNDHR  180
RLISTADNID GGTVQQFAGG SGILTTNNND NNHYGTPSYT PENSSTAASS SEQSFGAQVS  240
PGSELTDYYT IPVNDNPNTD NYFQANNGGE VGYSESLVST CGNYFNGGLG FEGFDQMDCQ  300
PNHNSNNNGS WSFLDSLWNV DDAWFSQQPF NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25351381103MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-253513224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_30289.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893513.10.0transcription factor MYB108-like
SwissprotQ9LDE18e-93MY108_ARATH; Transcription factor MYB108
TrEMBLB9HX621e-128B9HX62_POPTR; Uncharacterized protein
STRINGevm.TU.contig_30289.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-91myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]