PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_25091.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 545aa    MW: 60411.4 Da    PI: 4.6222
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_25091.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like21.36.2e-07214256253
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                            ++++ t +LH++Fv av+ L G e   P          gL  eh  SHLQkY
  evm.TU.contig_25091.4 214 NKIVRTDKLHNKFVPAVDFL-GVEGVFP--------SSGLKKEHTSSHLQKY 256
                            6778899*************.6665555........68************** PP
2Response_reg523.8e-18241291106
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            +l+ dD+p+ ++++ +++ k+gy +v +a+ + +a  +l+e++   Dl+l D ++p+md +++l+++++ + +lp+i++++  +e+ +
  evm.TU.contig_25091.4  24 ILLLDDDPICLSIVSRMMHKSGY-QVITARRAVDAFWILREREnrLDLVLADDQLPDMDKYQFLETMARVS-QLPVIMMSTDRDENGI 109
                            7999*******************.888899999999999666556**********************9988.9*************** PP

                            HHHHHTTESEEEESS--HHH CS
           Response_reg  87 lealkaGakdflsKpfdpee 106
                            l  l+ Ga+ +l+Kp   ++
  evm.TU.contig_25091.4 110 LGSLDNGAEFHLVKPLTYND 129
                            ***************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-2416135No hitNo description
SuperFamilySSF521721.34E-2320137IPR011006CheY-like superfamily
SMARTSM004484.4E-1322134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.43223138IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-1424131IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.06E-1725135No hitNo description
Gene3DG3DSA:1.10.10.605.3E-6212262IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MNQFKVVAPY SSEMNRMKVD NINILLLDDD PICLSIVSRM MHKSGYQVIT ARRAVDAFWI  60
LRERENRLDL VLADDQLPDM DKYQFLETMA RVSQLPVIMM STDRDENGIL GSLDNGAEFH  120
LVKPLTYNDV RSLWQFSVLR KIELNRLPSS SSSSENGMSS SAAESLHIFN SISLESDDDE  180
ESDANQSGSK RKQSENSSSR SSDDNSDPNL VKKNKIVRTD KLHNKFVPAV DFLGVEGVFP  240
SSGLKKEHTS SHLQKYLLSL KREQDEKFYI SPNVCLYQFS SIPLNMGGGG IYQLPGWENG  300
ISVIFHPEIK NIFKEHNVNP ANLQAAASVG RRFGAPAANF DVRQLPSSSH AAANFPPTSS  360
LTQNLVNFSN MIYGSAAAPL NYGYALENVG SDYNENKNMI YDSNDNKSST GSNLQPMKEK  420
GLVIGETSYN NNNNWTISGG DYLDYQLIDE STDWRAMLES VMGEELISVP QPQPMQEQVA  480
AHPAQAPQTL HPAPTPQIAQ PEAPQLSNVE FDMFGANGYG GVDGLFNMLT VTSNLFDQDF  540
SDLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_25091.4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911965.10.0two-component response regulator ARR14-like
STRINGevm.TU.contig_25091.40.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-21response regulator 14