PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.8.374.1 | ||||||||
Common Name | CHLNCDRAFT_15825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | C3H | ||||||||
Protein Properties | Length: 64aa MW: 7540.56 Da PI: 8.8579 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49.8 | 5.6e-16 | 1 | 27 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 + telCr + +tG C+yG++C+FaHg+ gw1.8.374.1 1 WQTELCRSWEETGSCRYGAKCQFAHGR 27 78***********************96 PP | |||||||
2 | zf-CCCH | 49.9 | 5.2e-16 | 39 | 64 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr+fa++GtC+yG rC+F+H+ gw1.8.374.1 39 YKTEVCRTFAQSGTCPYGTRCRFIHS 64 9************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.9E-6 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-13 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-19 | 1 | 33 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-10 | 1 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-16 | 34 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-10 | 35 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-6 | 38 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.854 | 38 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-12 | 39 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
WQTELCRSWE ETGSCRYGAK CQFAHGREEL RPVLRHPKYK TEVCRTFAQS GTCPYGTRCR 60 FIHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-27 | 1 | 64 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005848580.1 | 3e-41 | hypothetical protein CHLNCDRAFT_15825, partial | ||||
Swissprot | P47980 | 3e-27 | TIS11_DROME; Protein TIS11 | ||||
Swissprot | Q5ISE2 | 3e-27 | Z36L3_MOUSE; mRNA decay activator protein ZFP36L3 | ||||
TrEMBL | A0A2P6THQ8 | 4e-39 | A0A2P6THQ8_CHLSO; Ankyrin repeat domain-containing 13C isoform A | ||||
TrEMBL | A0A2P6THR3 | 4e-39 | A0A2P6THR3_CHLSO; Ankyrin repeat domain-containing 13C isoform B | ||||
TrEMBL | E1ZCQ5 | 7e-40 | E1ZCQ5_CHLVA; Uncharacterized protein (Fragment) | ||||
STRING | XP_005848580.1 | 1e-40 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3623 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 9e-28 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17355596 |
Publications ? help Back to Top | |||
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