PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.31.53.1 | ||||||||
Common Name | CHLNCDRAFT_16757 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | C3H | ||||||||
Protein Properties | Length: 109aa MW: 12788.6 Da PI: 8.4957 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.7 | 1.3e-10 | 50 | 71 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f++ GtCk+Gd C++aHg gw1.31.53.1 50 VPCPDFRK-GTCKRGDACTYAHG 71 69******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.51E-5 | 45 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 46 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 50 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-6 | 51 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 78 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3 | 81 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
YSTDAFRMFS FKIDCCPRLA ESHDWTLCPF QHPGEKARRR DPRCYTYHGV PCPDFRKGTC 60 KRGDACTYAH GVFECWLHPS RYRTQLCKEG AACRRSVCFF AHSVEQLRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005843420.1 | 1e-76 | hypothetical protein CHLNCDRAFT_16757, partial | ||||
Swissprot | P93755 | 6e-54 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | Q9LXV4 | 5e-54 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A2P6VMS1 | 2e-71 | A0A2P6VMS1_9CHLO; Zinc finger CCCH domain-containing 66-like | ||||
TrEMBL | E1ZS36 | 3e-75 | E1ZS36_CHLVA; Uncharacterized protein (Fragment) | ||||
STRING | XP_005843420.1 | 5e-76 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP60 | 15 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 2e-56 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Entrez Gene | 17350758 |
Publications ? help Back to Top | |||
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