PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh3_pg.C_scaffold_5000145 | ||||||||
Common Name | CHLNCDRAFT_50978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | C3H | ||||||||
Protein Properties | Length: 227aa MW: 26157 Da PI: 9.4306 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.3e-09 | 13 | 33 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 elCr+f+r G C++G+ C+F+H fgenesh3_pg.C_scaffold_5000145 13 ELCRHFLR-GRCRFGSACRFSH 33 8*******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.6E-5 | 9 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.079 | 10 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 12 | 38 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-8 | 12 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-6 | 13 | 33 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF56219 | 2.75E-16 | 59 | 177 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Gene3D | G3DSA:3.60.10.10 | 8.3E-6 | 66 | 164 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Pfam | PF03372 | 8.5E-11 | 68 | 185 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAEAAYVKHR VPELCRHFLR GRCRFGSACR FSHQREDVAL PFGHRQYVQS QASHAIRGNE 60 GGWRFRVLSY NVLADCLAQE HKELYTSAPR FSLEWSFRSR LIIREILHHS PDIVCLQEVD 120 RFPEFQHALQ PHGYEGVFTK RTGDRSDGLA MFWRINAMQP VDQRFLRFKD LGMKDNVAQL 180 LVFQRRESLL GAGFFLRCSK CGRCWSTSTA CACSSKRGAA DVLLQW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bt1_A | 4e-13 | 65 | 181 | 25 | 153 | Nocturnin |
6bt2_A | 4e-13 | 65 | 181 | 25 | 153 | Nocturnin |
6bt2_B | 4e-13 | 65 | 181 | 25 | 153 | Nocturnin |
6mal_A | 4e-13 | 65 | 181 | 24 | 152 | Nocturnin |
6nf0_A | 4e-13 | 65 | 181 | 24 | 152 | Nocturnin |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005849544.1 | 1e-168 | hypothetical protein CHLNCDRAFT_50978 | ||||
TrEMBL | E1Z925 | 1e-167 | E1Z925_CHLVA; Uncharacterized protein | ||||
STRING | XP_005849544.1 | 1e-167 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP882 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29560.2 | 2e-06 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17357221 |
Publications ? help Back to Top | |||
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