PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G29560.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 413aa    MW: 50376.8 Da    PI: 7.8451
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G29560.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-0795114525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +Cr+f+r G+Ck+G+ C F H
  AT1G29560.2  95 ICRYFLR-GYCKFGSVCGFQH 114
                  7******.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.15990117IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-490116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-594115IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MRFDESTQGW RDSDYESKWR FHERTPDWDW RDSESRMRSH ERTQDRRGSE SQGVFDERTE  60
RRQEPVRWPG EECWCLRCRN GGSCRYNHPT QLPQICRYFL RGYCKFGSVC GFQHIRDRDV  120
AEPMYENWSF DVRTQRRYEI EYSGFRPEKR AKTSLDSVEP DSRKRLEGLE NKREQENPQE  180
PERQRTEAQD NLQEFREQEN PQNQIQINTE RQRTMAHDNL QIVSDSRMHD PRRHDTELRL  240
EREKMVNREL EKQRIEHLID PLVRRYMQAK RDKEVEQRER ASIESQRIVA QEILRQQRLQ  300
GMRENQNVDS RMHDPRRHDT ELRLEREKMV NRELEKQRIE PLIGPLVRRY MQAKRDKEVE  360
QRERASIESQ RIVAQENLRQ QRLQGMRENQ NVDAHDQEKT QELGFKGKEG DGV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1864790260.0
Expression AtlasAT1G29560-
AtGenExpressAT1G29560-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G29560.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G29560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686671e-156AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence.
GenBankCP0026841e-156CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001117380.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLB6EUC40.0B6EUC4_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAT1G29560.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Deleu W, et al.
    Structure of two melon regions reveals high microsynteny with sequenced plant species.
    Mol. Genet. Genomics, 2007. 278(6): p. 611-22
    [PMID:17665215]