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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | fgenesh3_pg.C_scaffold_15000025 | ||||||||
| Common Name | CHLNCDRAFT_53340 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 1522aa MW: 160663 Da PI: 5.3552 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 52.9 | 1.3e-16 | 1371 | 1424 | 4 | 58 |
CBFB_NFYA 4 lYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
l VN+KQ Il+RR kR+k+e+e+kl + r+py+ + h hA R Rgs G+F
fgenesh3_pg.C_scaffold_15000025 1371 LHVNPKQLACILRRRSKRQKQEAENKL-PRVRQPYINKKLHTHATGRLRGSHGKF 1424
68*************************.**************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF48403 | 1.23E-25 | 47 | 232 | IPR020683 | Ankyrin repeat-containing domain |
| Gene3D | G3DSA:1.25.40.20 | 1.4E-29 | 50 | 233 | IPR020683 | Ankyrin repeat-containing domain |
| SMART | SM00248 | 320 | 82 | 110 | IPR002110 | Ankyrin repeat |
| CDD | cd00204 | 4.85E-18 | 143 | 232 | No hit | No description |
| PROSITE profile | PS50297 | 17.794 | 145 | 231 | IPR020683 | Ankyrin repeat-containing domain |
| PROSITE profile | PS50088 | 9.19 | 145 | 171 | IPR002110 | Ankyrin repeat |
| SMART | SM00248 | 7.4 | 145 | 174 | IPR002110 | Ankyrin repeat |
| Pfam | PF12796 | 5.7E-13 | 150 | 232 | IPR020683 | Ankyrin repeat-containing domain |
| PROSITE profile | PS50088 | 9.805 | 205 | 231 | IPR002110 | Ankyrin repeat |
| SMART | SM00248 | 0.0057 | 205 | 234 | IPR002110 | Ankyrin repeat |
| Pfam | PF03935 | 1.3E-50 | 639 | 893 | IPR005629 | Beta-glucan synthesis-associated, SKN1 |
| PROSITE profile | PS51762 | 11.807 | 672 | 1117 | IPR000757 | Glycoside hydrolase family 16 |
| Gene3D | G3DSA:2.60.120.200 | 1.2E-46 | 691 | 822 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
| SuperFamily | SSF49899 | 1.76E-30 | 725 | 823 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
| SuperFamily | SSF49899 | 1.76E-30 | 877 | 911 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
| Gene3D | G3DSA:2.60.120.200 | 1.2E-46 | 877 | 910 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
| Pfam | PF03935 | 1.5E-25 | 994 | 1140 | IPR005629 | Beta-glucan synthesis-associated, SKN1 |
| Gene3D | G3DSA:2.60.120.200 | 1.2E-46 | 999 | 1132 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
| SuperFamily | SSF49899 | 1.76E-30 | 1002 | 1129 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
| Gene3D | G3DSA:3.50.4.10 | 3.3E-8 | 1156 | 1224 | No hit | No description |
| CDD | cd01100 | 1.92E-8 | 1156 | 1240 | No hit | No description |
| Pfam | PF14295 | 9.5E-7 | 1166 | 1216 | IPR003609 | PAN/Apple domain |
| SMART | SM00521 | 1.0E-14 | 1366 | 1427 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 20.195 | 1367 | 1427 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 1.2E-7 | 1370 | 1392 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 1.5E-16 | 1371 | 1424 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 1.2E-7 | 1401 | 1424 | IPR001289 | Nuclear transcription factor Y subunit A |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0010262 | Biological Process | somatic embryogenesis | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1522 aa Download sequence Send to blast |
MVCLHFNRRV ARALVEEGFR LDRKEGFHAS YILLDLPWDE DGLRQRLGEE LHAAVQRDDR 60 TALRALLAAA DGGDAVRARS DRGWTLMMEA AARDRAALVH ELLPHFDLEA VDAQGATVHA 120 LAAWNGADAA LRALGPYRGT VGRDGRYTAL HQAASAGRAS TVHLLLEQGP DDGGSTCSTG 180 ETPLHRAAAQ GHTAVSAAVN ARTNAGWTPL FLAARAGSVE ALVALLDGGA DPLVPVGPAA 240 HRRLCWEALC LSEGVSTEQH GAAAEALLHC TLRCVAQQGR PWRGWTEGSL LGALTPLHLV 300 ALCGDAASIR QAVAAPGAAA LLTQRTGGVL GGANRLTALE LVIDLYSGLP ERGGAALWQA 360 VAPPLLPSYG SAAPLAEMLV SDRLRGGGAI VTPQLLAAGA LGADTGVVRR LAQLGYGPSR 420 GEDLAAAVAQ LAAALRAHAD GCGGGGGGGA AKDRSMMDAL KKVTTKQCMK LPGSVLSDFL 480 ANGVGSAVLQ FIQDHHDKVP HLVLSLMGQC LTVCIIPLRS FTYIVFIFQF YDQISVIPSS 540 SLCTSSAQAC SNLSSESIAA LSIVPVRPST INPRYCRPTR RAQPNWQRLL AACRCPSCEL 600 LTLPGARSNN LRVGLSGSAG GGQRGMKGRE LRGPCAALLP LLTALLATCV DHARAQDCAA 660 QLRAAAGAGA TTEWIDPATP DDACTAQLCT GDYAACNLVF SDEFETPGQA FGPAAGNPRW 720 TAERMWYWVT EDIEVYLPEQ VTTEGGAAVI TVDRVAAGQP NATALAQRPD GAVWNASSAF 780 KSGFVDSWNK FCFTGGYLEA RLQLPGDEVV SGFWPALWLM GNLGRAGRAQ STAGMWPFTY 840 DTCGGGDAGP TQQAISACPD PPGFDRTKFG LVPGQGRGAP EIDLVEVMVG SSRRLKPGQR 900 PPDPKPGQQV YPHNLLTLQA CGAACDGAAL LAPPSLAPPL TAPPLPNGTT WTDEGKPGPG 960 QYLPQDFLPE GMVTETAWWK GPFTEANDSQ QTRPGSLYQD AVGAYASLEP SFWTAYHTFG 1020 LVGGLAGLWH AAHWVPGQYI RWYIDGTLVY EVGSEALRAQ TNSTGYTTYE RLVPLEPMYI 1080 IFNLAMSNSF GYVDLEKLEF PSQYKVDYIR VFQNASAVNL GCSPKDFPTQ QYLACNRDKY 1140 LLTEEDQGLV QGACLQAPSC RQEANVNFEG GDIPSGDGQT FVQPRQLGSA RECCQACQAM 1200 PACGAYVYST SQQTCFFKAP TGWTKAPVAD QQWGALAGVV YDAGESWPRG TEGSGGPPPP 1260 APDGSPSAPP QPPSGGSGVP PPAPDGDGAA PPPRPSSGSS AMPPPPDTDE ASPAPPPAPS 1320 SGGARSGGRA ALQLAALPGE HPGRACGRAK VEAAAYHAAA QQQAGASGGL LHVNPKQLAC 1380 ILRRRSKRQK QEAENKLPRV RQPYINKKLH THATGRLRGS HGKFLSNAEA AEQERRRAAE 1440 PADRADTCLG RQPEHEEEGQ EEPLEQQEEG LDEQEQQEQE EEEGEGLEEE GGSEDEPQEA 1500 SPAEARAQQQ QQQQHDPADR S* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6moj_A | 8e-13 | 47 | 231 | 11 | 201 | Dimeric DARPin ACR5 (A_angle_R5) |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_005845959.1 | 0.0 | hypothetical protein CHLNCDRAFT_53340 | ||||
| TrEMBL | E1ZJG5 | 0.0 | E1ZJG5_CHLVA; Uncharacterized protein | ||||
| STRING | XP_005845959.1 | 0.0 | (Chlorella variabilis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G14020.1 | 2e-12 | nuclear factor Y, subunit A6 | ||||
| Link Out ? help Back to Top | |
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| Entrez Gene | 17353384 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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