PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh3_pg.C_130033
Common NameCHLNCDRAFT_58138
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 687aa    MW: 70398.6 Da    PI: 6.4657
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh3_pg.C_130033genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.2e-12125151127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                  ykt++C ++ r+G C++G++C+FaHg+
  estExt_fgenesh3_pg.C_130033 125 YKTAICAHWERFGDCRHGATCNFAHGE 151
                                  9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.62449IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-63753IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.0613750IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-12121155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-8123155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497124152IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6124151IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9125151IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.59E-15607673No hitNo description
PROSITE profilePS5169814.066611686IPR003613U box domain
PfamPF045641.6E-9615673IPR003613U box domain
SMARTSM005041.1E-15615677IPR003613U box domain
Gene3DG3DSA:3.30.40.101.6E-15615677IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MASSSQQAPG LTALERQRLL LRSSLKMAVM CDNPRPCRYG DRCMFAHSVE EVRVLRATRE  60
AERPKEGEAV ATPGRSQEFA PSSAGVPRPA AFASSATFTY TPARLQGKRD WDSGGSRGYC  120
HPSKYKTAIC AHWERFGDCR HGATCNFAHG EAEIRRYTAG QSSYRARHHY VGGQAAGRSC  180
SGANGGLSGY TSEAEAEGQE DSCPPLMAAA YPQEYALQRS RNAQRHTDEL QRRLSAAAAA  240
AQGAGAAAQG APPPGAPPPQ LEDSEQFPAL GRGAGGAGAA AAAPAAPAAP QHSRQASQTG  300
SEEPAAGLSK RMSQEWEGSS TTSSAPTTVC IGEPGLQRAP SSSGASRAGS VHSVGAESED  360
GDAGHGAHAA PPSAPPSCAG SPAKRAMAAR APAPARGEAA AAPAPAPDAP LEKAGSWADM  420
DEEEEFEEGQ QQAQQPEQEE AAEQQEEAEV EERRQEAAAE PVVVAAAKPA AAASKPILVP  480
TVVFVDAAAS PPAPATLCPL EVMHVAAPPA APARPAPHPA AAQAAPAPIP VPVPAHSAPA  540
LGVPAPNAVM PLPPPGFGRA PPPPPRHAAY QPAMPAAAGG GAPPAPQHAT PPAQAAFMQR  600
MAAAAGGVDL SLVPAFMCPL TGRPFTHPVV AADGITYEKE VITDWLQNKE VSPITGKQLS  660
HRLLLPNDCV RAAMGQVAEL IRAMVS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846582.10.0hypothetical protein CHLNCDRAFT_58138
TrEMBLE1ZHK60.0E1ZHK6_CHLVA; Uncharacterized protein
STRINGXP_005846582.10.0(Chlorella variabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-07C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]