PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_Genewise1.C_120284 | ||||||||
Common Name | CHLNCDRAFT_31479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | C3H | ||||||||
Protein Properties | Length: 189aa MW: 21824.2 Da PI: 5.9741 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.7 | 1.6e-12 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd CkF+H+ estExt_Genewise1.C_120284 43 YQPDICKDYKETGYCGYGDACKFMHD 68 67789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.05E-9 | 39 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-10 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-12 | 43 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 3.3E-11 | 101 | 163 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 4.8E-7 | 118 | 163 | No hit | No description |
SuperFamily | SSF57850 | 3.03E-10 | 118 | 164 | No hit | No description |
PROSITE profile | PS50089 | 9.819 | 119 | 160 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 0.0014 | 119 | 159 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 137 | 146 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MNSYKDFRAG FRREHTVGAE KGSGSHGPLR ASTNVRMTVR FDYQPDICKD YKETGYCGYG 60 DACKFMHDRG DYKAGWEIDR DWDTQQKEKR ERLLAGWKPE DEEEEAKDSE EDDELPFACL 120 ICRRPWAEAQ DPVVTRCKHY FCEQCALQHN AKTPKCFACE QPTGGIFNVA HEIVRREKAR 180 QRKEAGDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 2e-53 | 1 | 186 | 156 | 327 | RING finger protein 113A |
5z58_M | 2e-53 | 1 | 186 | 156 | 327 | RING finger protein 113A |
6ff4_t | 2e-53 | 1 | 186 | 156 | 327 | RING finger protein 113A |
6ff7_t | 2e-53 | 1 | 186 | 156 | 327 | RING finger protein 113A |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005846922.1 | 1e-139 | hypothetical protein CHLNCDRAFT_31479 | ||||
Swissprot | Q8GX84 | 5e-76 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | E1ZGV8 | 1e-138 | E1ZGV8_CHLVA; Uncharacterized protein | ||||
STRING | XP_005846922.1 | 1e-139 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1483 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 4e-77 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17354477 |
Publications ? help Back to Top | |||
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