PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.11.245.1
Common NameCHLNCDRAFT_23683
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family ERF
Protein Properties Length: 150aa    MW: 16652.8 Da    PI: 9.3356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.11.245.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-1468117155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+ ++ +grW+A+I +p   g +k+++lg f  + +Aa+a+++a  +l+g
  e_gw1.11.245.1  68 SSYRGVTHHP-SGRWEARIGVP---G-SKHIYLGLFAEEADAARAYDRALVRLRG 117
                     67*****999.7*********8...3.6**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.572133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-7133IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-1668126IPR016177DNA-binding domain
PfamPF008472.1E-768117IPR001471AP2/ERF domain
PROSITE profilePS5103216.769125IPR001471AP2/ERF domain
SMARTSM003804.3E-2469131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1869126IPR001471AP2/ERF domain
PRINTSPR003672.7E-77081IPR001471AP2/ERF domain
PRINTSPR003672.7E-7107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
VYAGGYEQEE HAAEAFDIAA LKCKGRRVKT NFEIGKYADL LGCIGKMSME ELVMAVRRQS  60
QGFSRGSSSY RGVTHHPSGR WEARIGVPGS KHIYLGLFAE EADAARAYDR ALVRLRGRGA  120
ATNFALSDYR TEMADYHQMQ SRTLKADER*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005847221.11e-107hypothetical protein CHLNCDRAFT_23683, partial
SwissprotQ6PQQ35e-35AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLE1ZGA41e-105E1ZGA4_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005847221.11e-106(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-18AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]