PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.1.679.1
Common NameCHLNCDRAFT_18295
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 349aa    MW: 38277.6 Da    PI: 8.6543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.1.679.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08729427
                   ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                   +lC++++  G Ck+G+ C F+H++
  e_gw1.1.679.1  7 VLCKYYLH-GACKFGAACAFSHSM 29
                   79**7777.*************85 PP
2zf-CCCH30.75.2e-103655525
                   --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    C+f++r G+C+yGdrC+++H
  e_gw1.1.679.1 36 VCKFYLR-GECSYGDRCRYMH 55
                   6******.************* PP
3zf-CCCH18.24.5e-06122145326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++lC+ ++ +G C +GdrC+  Hg
  e_gw1.1.679.1 122 RSLCMQWFSSGACGRGDRCQLVHG 145
                    579****************97777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.258330IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6628IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6728IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5831IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.6243158IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-63257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-73356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-73560IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-83655IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.39119147IPR000571Zinc finger, CCCH-type
SMARTSM003560.025120146IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4122145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4123146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.3E-11180248IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.29E-5188248No hitNo description
SuperFamilySSF578501.7E-11188252No hitNo description
PROSITE profilePS5008912.297189246IPR001841Zinc finger, RING-type
PfamPF000971.6E-7189245IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.2E-7189245IPR001841Zinc finger, RING-type
PROSITE patternPS005180213222IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.925275304IPR000571Zinc finger, CCCH-type
SMARTSM003560.43276303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGATSHVLCK YYLHGACKFG AACAFSHSMA DGESQVCKFY LRGECSYGDR CRYMHTKPDR  60
AQPPTTWQSS CLSRGCAWAA RLSTPTRRLL GGGAQQPGVW SLPEGGGGQP GWAAGGSHPS  120
LRSLCMQWFS SGACGRGDRC QLVHGELCQH CHKHALHPTD APARQQHLAE CRLRHERLAA  180
RAASSAVECS ICLEAVLSKA APGERKFGLL TGCDHPFCLR CIRSWRQNTD GSVDIDTALR  240
TCPVCRTTSY YIVPSLVWPT SGEEKERILA GYKAKLSLID CRYFNFGDGT CPFGTSCFYR  300
HAYHDGRLED KGLRKAADEE GHIRVMQPVR LSDFIAASTA GQRLGRRR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005852185.10.0hypothetical protein CHLNCDRAFT_18295
TrEMBLE1Z3010.0E1Z301_CHLVA; Uncharacterized protein
STRINGXP_005852185.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-87C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]