PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_9_00280

Common Name

CHLNCDRAFT_145473

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Nin-like

Protein Properties

Length: 504aa MW: 52635.1 Da PI: 5.1184

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_9_00280	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	36.1	1.3e-11	213	257	6	49
RWP-RK 6 sledlskyFslpikdAAkeLgvc.lTvLKriCRqyGIkRWPhRki 49 ++ + + +F+++ dAA++Lg + TvLK+ R++GIk WP+Rk IGS.gm_9_00280 213 TILEQEGCFNMTQVDAARHLGFGsSTVLKKVMRRLGIKQWPYRKR 257 34444558***********983699**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.583	186	280	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-11	215	258	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
METRLDTREQ HAAANHLADV KAAPSGTASP GPPLLRPEVK AQLELEDNLL FLLANIANDE 60 GEGKEEGGTT GLGRLGEDAS SSGGSSDTQS KLPAGDEQPA AGGRRQQRQA AAQQRLRLRQ 120 RAAMEEEEEE EVADGSDSDL GGAALSDSDA PLGEQQPRAR AAAAGAAAAA AAAGEGEGEE 180 EGEGARPAKR PKPSKPPAVL GPRKYVSSQI TITILEQEGC FNMTQVDAAR HLGFGSSTVL 240 KKVMRRLGIK QWPYRKRTSA KKITHSLEEY MRKYGDPAKV DAVLERVRME LAVYEASPTG 300 SIPLRPELAA LRQRLYKLDN KVKHEFKRDA EAPLRQCVHS LVEKTWQELQ PTWMSDLAQQ 360 QLPGGGEAPP LAHLPPMPLP AAAEAGAGRE GEGGAEGGVS DATLMLAMLL AQGVTVPPAF 420 LVPVGGAPAP APAPAKGTGS EASAATQQQQ QQPQQQPKVE QPAPATMTPE EAEAAAKARV 480 AALAPDLPPP AAAAAPAPVP AQA*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

METRLDTREQ HAAANHLADV KAAPSGTASP GPPLLRPEVK AQLELEDNLL FLLANIANDE  60
GEGKEEGGTT GLGRLGEDAS SSGGSSDTQS KLPAGDEQPA AGGRRQQRQA AAQQRLRLRQ  120
RAAMEEEEEE EVADGSDSDL GGAALSDSDA PLGEQQPRAR AAAAGAAAAA AAAGEGEGEE  180
EGEGARPAKR PKPSKPPAVL GPRKYVSSQI TITILEQEGC FNMTQVDAAR HLGFGSSTVL  240
KKVMRRLGIK QWPYRKRTSA KKITHSLEEY MRKYGDPAKV DAVLERVRME LAVYEASPTG  300
SIPLRPELAA LRQRLYKLDN KVKHEFKRDA EAPLRQCVHS LVEKTWQELQ PTWMSDLAQQ  360
QLPGGGEAPP LAHLPPMPLP AAAEAGAGRE GEGGAEGGVS DATLMLAMLL AQGVTVPPAF  420
LVPVGGAPAP APAPAKGTGS EASAATQQQQ QQPQQQPKVE QPAPATMTPE EAEAAAKARV  480
AALAPDLPPP AAAAAPAPVP AQA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	245	LKKVMRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005848136.1	0.0	hypothetical protein CHLNCDRAFT_145473
TrEMBL	E1ZDJ9	0.0	E1ZDJ9_CHLVA; Uncharacterized protein
STRING	XP_005848136.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	9e-08	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17355368

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]