PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_6_00503

Common Name

CHLNCDRAFT_143929

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 424aa MW: 43431.8 Da PI: 8.0328

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_6_00503	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.7	5.8e-14	348	394	2	48
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ke ++ +r++kNRe+A rsR++++++++ Le+ v++L+++N L+ + IGS.gm_6_00503 348 KEGRAIKRAIKNRESAARSRAKRQEYTATLEQQVEQLKTQNNNLRHQ 394 666789**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.7E-8	347	416	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.4E-12	348	394	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.99	349	395	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.40E-17	351	396	No hit	No description
SuperFamily	SSF57959	2.19E-10	351	395	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.9E-13	351	395	No hit	No description
PROSITE pattern	PS00036	0	354	369	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MAGFGTDFSQ VLNLTLKDVE EQLGATEAQE EVLKQLYNSN TLDTLPSFMR APSWQQQGAA 60 GGQPPSDGKG GAAAAPAAVV VAPNAAAWEA AAAAGAAAAQ EQQQEQQRQE AAAAAAAAAA 120 AAAQQQQQQQ QQGGALPLSS VRMDQIFSWY AENQAHAQRP QAPLPSMTLS QLFDSAGLHL 180 APPGTLPQSA AAQGPVVVLP QAPAALHAQL GLGGGGGPAS GAPGMGSLHM HAVGSMLPPG 240 LSPAGPFASS SLPMVDPSLM PPSMQPPHSM QPHSMQPHSM QPQGLPPRGD AAAAARAARA 300 RKRKAGADGG PAAKPGALSA AEAARQALEV AERAAAELAE LPQDLGDKEG RAIKRAIKNR 360 ESAARSRAKR QEYTATLEQQ VEQLKTQNNN LRHQVIATAA APPDPRAAKL EGELLRRSRT 420 GPI*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MAGFGTDFSQ VLNLTLKDVE EQLGATEAQE EVLKQLYNSN TLDTLPSFMR APSWQQQGAA  60
GGQPPSDGKG GAAAAPAAVV VAPNAAAWEA AAAAGAAAAQ EQQQEQQRQE AAAAAAAAAA  120
AAAQQQQQQQ QQGGALPLSS VRMDQIFSWY AENQAHAQRP QAPLPSMTLS QLFDSAGLHL  180
APPGTLPQSA AAQGPVVVLP QAPAALHAQL GLGGGGGPAS GAPGMGSLHM HAVGSMLPPG  240
LSPAGPFASS SLPMVDPSLM PPSMQPPHSM QPHSMQPHSM QPQGLPPRGD AAAAARAARA  300
RKRKAGADGG PAAKPGALSA AEAARQALEV AERAAAELAE LPQDLGDKEG RAIKRAIKNR  360
ESAARSRAKR QEYTATLEQQ VEQLKTQNNN LRHQVIATAA APPDPRAAKL EGELLRRSRT  420
GPI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849209.1	0.0	hypothetical protein CHLNCDRAFT_143929
TrEMBL	E1ZAR9	0.0	E1ZAR9_CHLVA; Uncharacterized protein
STRING	XP_005849209.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9391	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17770.2	4e-09	basic region/leucine zipper motif 27

Link Out ? help Back to Top
Entrez Gene	17356446

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]