PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_5_00447
Common NameCHLNCDRAFT_143118
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family GATA
Protein Properties Length: 427aa    MW: 43740.4 Da    PI: 8.8363
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_5_00447genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.4e-153464131
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31
                    C+ Cg+tkTp+WR+gp g ktLCnaCG++  
  IGS.gm_5_00447 34 CTKCGATKTPQWREGPFGAKTLCNACGVKRT 64
                    ***************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-72877IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-113166No hitNo description
Gene3DG3DSA:3.30.50.101.5E-113362IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.8E-133462IPR000679Zinc finger, GATA-type
CDDcd002025.00E-113479No hitNo description
PROSITE profilePS5011411.0953461IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTELAGPGAA HQSSPFDDEE FAFAHGAING VKCCTKCGAT KTPQWREGPF GAKTLCNACG  60
VKRTRKLRAE QEGAKRRRLS ASPAPPPQAK HAFAAPKYGA SRGAQYSQDA PTMDSYGSLE  120
PDSEAWGLPA AHGTRRPPRR AAEEAAFRTA RYARTGEWAE AQAHCEEAPR AATPSSSSDG  180
YSQPSSSCPE EVSWPPAAAG GAPRGSDCYA AINLMTMSAT QTAAAHAAAS CGAAPAAAAH  240
PCPAPAACPA SPASAALHFD AEQFNHDSLV ALAARYGAGA GAPPHHRVAP VTLSDLSRCL  300
PPAKVLELVR LNQELEVAVH EAHAASAAVA AVAQVLACKQ AAALRSRDVA GAATKRLRRF  360
MAELDTQFGI QSKFGAGRPP LSPTKPTGAA ALASPAKPLM AAARSPAAPV LAPLLPAAPA  420
LQARTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17478KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849623.10.0hypothetical protein CHLNCDRAFT_143118
TrEMBLE1Z9H70.0E1Z9H7_CHLVA; Uncharacterized protein
STRINGXP_005849623.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.15e-12GATA transcription factor 7
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]