PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_32_00066

Common Name

CHLNCDRAFT_141228

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

C3H

Protein Properties

Length: 572aa MW: 58358.7 Da PI: 9.2115

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_32_00066	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	99	119	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ r G+C +Gd+C+++Hg IGS.gm_32_00066 99 ACPDYKR-GICLRGDSCTYSHG 119 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.206	94	121	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.2E-7	94	120	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-4	95	122	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	98	119	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8	129	152	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MANLLYQSLQ PGLEEDLFAA DAAYAAAAVG LNSADESLPY STSELNAPEY STDDFRMFQF 60 KVARCSKRYV HDWRACPFAH PTENARRRDP RLVKYLPVAC PDYKRGICLR GDSCTYSHGV 120 YECWLHPAKY RTQLCKEGPN CRRPVCFFAH SVLDLRQPSH SMYAASGGAP PAAAAADDAQ 180 GAAVAAALSQ QTAAAAAAMA GARLSADASF GRLSSEEMLN NIQGQDSRSP SEVLAALPAA 240 ATAAAALLAR SPSSRQSSAS LTRSSSDTRP VGSAPHSPAR SRSPPSPTPN PPEQPARQRS 300 ADAAAAAAVS DAAAAMAVLT QQQQAQAQAA AAQAAAALAR LSMESRASLD ASAAAAAAAA 360 TTKAMLQGGG SASLPPRMSL DSLLASRQAA AAGGWAPGAA PAPPTAAAAL ASGTSSLPLN 420 EQPFPSGNAP RMSNAVARKL GLAPQRSSLD ARVGKLRGAA TPPRSSIDGI LHALQQSSAR 480 SSLDQQHAAM LHAMGGQQLQ GMAGLNGAAG GAPQVPHLNG YHAMPPAAYG GPLPGAYAMP 540 PAGPTGPDGM ALHPALLSLA IPSRARLPCL R*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MANLLYQSLQ PGLEEDLFAA DAAYAAAAVG LNSADESLPY STSELNAPEY STDDFRMFQF  60
KVARCSKRYV HDWRACPFAH PTENARRRDP RLVKYLPVAC PDYKRGICLR GDSCTYSHGV  120
YECWLHPAKY RTQLCKEGPN CRRPVCFFAH SVLDLRQPSH SMYAASGGAP PAAAAADDAQ  180
GAAVAAALSQ QTAAAAAAMA GARLSADASF GRLSSEEMLN NIQGQDSRSP SEVLAALPAA  240
ATAAAALLAR SPSSRQSSAS LTRSSSDTRP VGSAPHSPAR SRSPPSPTPN PPEQPARQRS  300
ADAAAAAAVS DAAAAMAVLT QQQQAQAQAA AAQAAAALAR LSMESRASLD ASAAAAAAAA  360
TTKAMLQGGG SASLPPRMSL DSLLASRQAA AAGGWAPGAA PAPPTAAAAL ASGTSSLPLN  420
EQPFPSGNAP RMSNAVARKL GLAPQRSSLD ARVGKLRGAA TPPRSSIDGI LHALQQSSAR  480
SSLDQQHAAM LHAMGGQQLQ GMAGLNGAAG GAPQVPHLNG YHAMPPAAYG GPLPGAYAMP  540
PAGPTGPDGM ALHPALLSLA IPSRARLPCL R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843390.1	0.0	hypothetical protein CHLNCDRAFT_141228
TrEMBL	E1ZSD6	0.0	E1ZSD6_CHLVA; Uncharacterized protein
STRING	XP_005843390.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	9e-47	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Entrez Gene	17350691

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]