PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_28_00058 | ||||||||
Common Name | CHLNCDRAFT_140027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | GATA | ||||||||
Protein Properties | Length: 192aa MW: 20362.9 Da PI: 9.3524 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52 | 9.7e-17 | 121 | 155 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35 Cs+Cg+t++p+WRrgp ++ + LCnaCG +yr++++ IGS.gm_28_00058 121 CSHCGATESPQWRRGPpNKAI-LCNACGTRYRRTNQ 155 ****************66666.**********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 6.18E-13 | 114 | 155 | No hit | No description |
SMART | SM00401 | 2.4E-14 | 115 | 169 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.018 | 115 | 151 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.8E-13 | 120 | 154 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.03E-15 | 120 | 171 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 121 | 146 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-14 | 121 | 155 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAPFGSTDSM DFFNDLPPLE EAPKSTAAQS LFEGLASLKQ SRVLYRLALV DTETGRPLGY 60 ASDNDLERLA SGSKPAVPSP PSPRAQLASH QQHLAAAEQQ AKEPSFQTLL AETHKTGGPV 120 CSHCGATESP QWRRGPPNKA ILCNACGTRY RRTNQLGSAV PSTQRKRGAQ HCGSEVAKAA 180 GHPPKQPRVV A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005843659.1 | 1e-139 | hypothetical protein CHLNCDRAFT_140027 | ||||
TrEMBL | E1ZRF1 | 1e-137 | E1ZRF1_CHLVA; Uncharacterized protein | ||||
STRING | XP_005843659.1 | 1e-138 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 3e-12 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
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Entrez Gene | 17350979 |
Publications ? help Back to Top | |||
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