PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_27_00067
Common NameCHLNCDRAFT_139889
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 491aa    MW: 50698.8 Da    PI: 7.9855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_27_00067genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.8e-097798526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C++f++tG C++Gd C+++Hg
  IGS.gm_27_00067 77 ACPDFRKTGVCRRGDACPYSHG 98
                     7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.76E-671102IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-67299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.44672100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-575100IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-77798IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGTLLETPAA AGGPKFSDIT FDLSEPSFQS DHFRMYDFKV KRCPRARPHD WTACPFAHPG  60
EKAKRRDPRR YRYSGTACPD FRKTGVCRRG DACPYSHGVF ECWLHPSRYR TQMCTDGPSC  120
RRRVCFFAHF EHELRRAEEY PPLLNQQLHA GLVADARALQ QQQLAQALSG ILGSSAPALP  180
GGSPAGLEPL MSVQLLKTLS QQTPASLIPG DSAPATPTGL SGLSPTTTLG GGVQDSSSLL  240
LQLQLMQQQQ QQQHGGGQLG GALAATLSDA SQHSGSSPGG SPRIMQHPAD VRTPSAIDAA  300
RQGSPPAMVA AEEASQLARY IQQQQQQQQQ QQQAAAAAAA AGSIDPALLA ALQNLGLGGT  360
QEALEAAGLG LGLASARRSI DNGALSRSGT ADNYLAAAAA ALASGNAVGS LGGGAAPSAP  420
PAASPLLGPA GGSSLPSRNY MAAAAALQGA ALARGASGGQ PGLDEDRTLS LDHILAELPR  480
SASQVNLPPQ *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843823.10.0hypothetical protein CHLNCDRAFT_139889
TrEMBLE1ZR500.0E1ZR50_CHLVA; Uncharacterized protein
STRINGXP_005843823.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.23e-57C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]