PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_20_00224
Common NameCHLNCDRAFT_138475
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family bZIP
Protein Properties Length: 684aa    MW: 66832.4 Da    PI: 6.8726
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_20_00224genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1408.8e-13171230362
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      e kr  r+q+NRe A+ sRqRKk+++ eLe ++ +L++ N +L+ ++++l+ e  +l+++
  IGS.gm_20_00224 171 EEKRLARMQRNRENAQLSRQRKKQQMSELEARCGTLTQRNAQLAATVQRLTAENMQLRQQ 230
                      679*****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-12169233IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-15169232No hitNo description
PfamPF001701.2E-10170231IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.266171234IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.95E-10173231No hitNo description
CDDcd147042.76E-21174225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAAAPAPEDT WGELLLDGLP NVGLLDDLQL DCGLSDVGLP PGLHDLECLD LDDLGAAGGG  60
AAPASSDLLE SLQLDAFSHP ASSSDARHSP SDSGSDSPVV LPLVGAAPAA PATGPRQGTP  120
PRGADASPAT SESETNGGGR SGSPAAATSQ RGAQAGGAAA AQQPQRPLSE EEKRLARMQR  180
NRENAQLSRQ RKKQQMSELE ARCGTLTQRN AQLAATVQRL TAENMQLRQQ LVLVCQQAGR  240
ATGAAGAKPA AGAAAAAAAA QAGKVAGAAQ APATVAAAAA KGAQPAAGAA PAGVAPKGVI  300
PQWPLLPFGF LPKVTFSVQQ SGRPTGQPAA AAAAAAAAPA KPAQPAAAGA ARAAPAAPAA  360
ARPPKRAKTA AAGASSALLA LFTLFMFAGP LTPAPLAAPG ASSASAAASI AAAAGAQRML  420
QALPESAAAP FLDGGEAAAG GGRRLQALPA AASEGQAPPR ALPAGGGRLH QLLNSTLQAL  480
MEEPGNAALE AAALQRLQEL GPVALLLDAD GGAGAGPLAA SAAFPRLAGQ LFGGAGLEVP  540
QMCHKVLEFD AASVPHAVRS RRSLERYVLG ATGFRGRSLA AATADGGGGG AAAADPEPLR  600
IEQPAAAGGE EGGGEEDGGG GGGTALLPRG GVAAGPVLVS VLLPANASGG VKLASVDKVF  660
VVLLHPQDKY LTYSCPLPRP VFL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844912.10.0hypothetical protein CHLNCDRAFT_138475
TrEMBLE1ZN500.0E1ZN50_CHLVA; Uncharacterized protein
STRINGXP_005844912.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP539288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.18e-08bZIP family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]