PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_20_00022

Common Name

CHLNCDRAFT_138273

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

ERF

Protein Properties

Length: 1156aa MW: 114392 Da PI: 6.694

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_20_00022	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.8	3.6e-10	1028	1077	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ + ++ rW A++ rkr++lg + ++e Aa+a+++ + +l g IGS.gm_20_00022 1028 SRYQGVCLCGNNRRWQAQVTFK-----RKRHYLGMHASEEAAARAYDQGAICLLG 1077 78**************6663.....6******************9999977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.18E-6	777	819	IPR016177	DNA-binding domain
SuperFamily	SSF54171	2.29E-13	1028	1087	IPR016177	DNA-binding domain
Pfam	PF00847	2.5E-5	1028	1075	IPR001471	AP2/ERF domain
CDD	cd00018	5.50E-10	1028	1086	No hit	No description
PROSITE profile	PS51032	13.327	1029	1085	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-11	1029	1085	IPR001471	AP2/ERF domain
SMART	SM00380	6.2E-10	1029	1091	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1156 aa Download sequence Send to blast
MEHVEPAQDV GAALWSCGGG AFYIPAGLLE TAALAQAGLL WGLPHPAAAA GNLAYGGSGH 60 LAAASFYGSG QPEPAWMPGG GPAAAYVRPA AAPAGHGQPA LAFMPVAEAG GGRSSPDAEP 120 GTDSSEEPAQ GDGGEAAAPL AAAAAAAGAA AAAAASSGAA LPAQMQAHLQ PAYAAQAGQH 180 GTAAAVAARL LGIDELVPGM AAAPAAGDKA ARRALAAAEQ MPGGLEWEEP VSVDDLFGPD 240 DSWLRGTPAP TLGAASSGQQ GQGPGARLAA APAVSQQAQA APAASGPTGG TRSSVAGRDP 300 RLPPPPPGTP TSLAYRQQQL SEVMAALQSV SQLQSAGQLP LQLPGRGAGL AAAAAAAGAG 360 PSPGGALPLH AQQRQQQEHG EEAEEEANAD TAAALAALDC ARLAGPAAAG GAHGAGPAAG 420 VLATFEQLWR QAAARSAAAA ATPAAAAAAE APSAAAEGPQ RRFTRRNRGA DAPAQAQAPA 480 PTPAAAAAAR HAAAAAAALG LAQAQGGLAS LQLRQVDGAG DSPSPPQSKR GGPPSQARRQ 540 AVAPPRAAAA ARSCGCKRSA EAEAEAGQGE GEGGQDAQAA PQRRRRTSRR QTGADGADEQ 600 QAAAVPAASP AVTAAALAAG LAGGEYVFAG LPSGVAANGG LLPLFLPGGL FRPPGLLPQT 660 PPQQLQGQAG GAAAAGDPSS AAAPALAAAA AAAGGLVPLL ALGGGGAAPA AAQVAVALPG 720 GGYLLHTPPH LMKTSAYRQE ACCRRLAPGA ALALPSSCLS CCSPCLSCLP VFAQVPLGVS 780 WCKRRSLWEA AISINGKRER LGFYRQEEAA ARAYDLVASW RNKQIVRQKA ARSGQPRRRR 840 RRPHSGRKGG KRRRGGDGSD GDDEGEEEEV EEEQEQPRRQ MSQLLPLNRP GEAPQLAPLG 900 SLEEVLQQIR EASRQQLKED GQPTSPAAGA AAAAAAPRRQ QRRRAVDSSG DEEEEEGEGE 960 QQPAAAGAGA ASGSELITNT QLPHGGPAAA AAGLPAGLQL VQPAHAAAGA GAGAAAAAAA 1020 LHPVAKSSRY QGVCLCGNNR RWQAQVTFKR KRHYLGMHAS EEAAARAYDQ GAICLLGTQA 1080 QTNFPIELYD AAALSSQDIT EVAASLKALG RPSRGGGGDG GKGKGKGRRL AIAAASDGSG 1140 EDSDATVTET ETEDE*

Sequence ? help Back to Top

Protein Sequence Length: 1156 aa Download sequence Send to blast

MEHVEPAQDV GAALWSCGGG AFYIPAGLLE TAALAQAGLL WGLPHPAAAA GNLAYGGSGH  60
LAAASFYGSG QPEPAWMPGG GPAAAYVRPA AAPAGHGQPA LAFMPVAEAG GGRSSPDAEP  120
GTDSSEEPAQ GDGGEAAAPL AAAAAAAGAA AAAAASSGAA LPAQMQAHLQ PAYAAQAGQH  180
GTAAAVAARL LGIDELVPGM AAAPAAGDKA ARRALAAAEQ MPGGLEWEEP VSVDDLFGPD  240
DSWLRGTPAP TLGAASSGQQ GQGPGARLAA APAVSQQAQA APAASGPTGG TRSSVAGRDP  300
RLPPPPPGTP TSLAYRQQQL SEVMAALQSV SQLQSAGQLP LQLPGRGAGL AAAAAAAGAG  360
PSPGGALPLH AQQRQQQEHG EEAEEEANAD TAAALAALDC ARLAGPAAAG GAHGAGPAAG  420
VLATFEQLWR QAAARSAAAA ATPAAAAAAE APSAAAEGPQ RRFTRRNRGA DAPAQAQAPA  480
PTPAAAAAAR HAAAAAAALG LAQAQGGLAS LQLRQVDGAG DSPSPPQSKR GGPPSQARRQ  540
AVAPPRAAAA ARSCGCKRSA EAEAEAGQGE GEGGQDAQAA PQRRRRTSRR QTGADGADEQ  600
QAAAVPAASP AVTAAALAAG LAGGEYVFAG LPSGVAANGG LLPLFLPGGL FRPPGLLPQT  660
PPQQLQGQAG GAAAAGDPSS AAAPALAAAA AAAGGLVPLL ALGGGGAAPA AAQVAVALPG  720
GGYLLHTPPH LMKTSAYRQE ACCRRLAPGA ALALPSSCLS CCSPCLSCLP VFAQVPLGVS  780
WCKRRSLWEA AISINGKRER LGFYRQEEAA ARAYDLVASW RNKQIVRQKA ARSGQPRRRR  840
RRPHSGRKGG KRRRGGDGSD GDDEGEEEEV EEEQEQPRRQ MSQLLPLNRP GEAPQLAPLG  900
SLEEVLQQIR EASRQQLKED GQPTSPAAGA AAAAAAPRRQ QRRRAVDSSG DEEEEEGEGE  960
QQPAAAGAGA ASGSELITNT QLPHGGPAAA AAGLPAGLQL VQPAHAAAGA GAGAAAAAAA  1020
LHPVAKSSRY QGVCLCGNNR RWQAQVTFKR KRHYLGMHAS EEAAARAYDQ GAICLLGTQA  1080
QTNFPIELYD AAALSSQDIT EVAASLKALG RPSRGGGGDG GKGKGKGRRL AIAAASDGSG  1140
EDSDATVTET ETEDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	835	842	PRRRRRRP
2	836	841	RRRRRR
3	839	853	RRRPHSGRKGGKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844933.1	0.0	hypothetical protein CHLNCDRAFT_138273
TrEMBL	E1ZMP3	0.0	E1ZMP3_CHLVA; Uncharacterized protein
STRING	XP_005844933.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5526	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-08	related to AP2.7

Link Out ? help Back to Top
Entrez Gene	17352280

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]