PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_13_00253 | ||||||||
Common Name | CHLNCDRAFT_135325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 433aa MW: 44607.9 Da PI: 9.3896 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 58.2 | 2.2e-18 | 8 | 84 | 1 | 74 |
--SSTT-----TT--HHHHHTT--HHHHT-S-E...EETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvv...lvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74 +Cqv g e + +++++rr +Ce h++a++v sg rfCqqC+r l +fD ++rsCr L+k r+r IGS.gm_13_00253 8 RCQVCGAELGVDVTRSFFRRNAICEEHARAETVpdpSWSGGLMRFCQQCTRLQPLAQFDGTRRSCRASLSKRRIRKR 84 6***99999999******************999444579999***************************99877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-17 | 5 | 73 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 16.665 | 6 | 86 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.24E-16 | 7 | 85 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-23 | 9 | 84 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MQVVHDVRCQ VCGAELGVDV TRSFFRRNAI CEEHARAETV PDPSWSGGLM RFCQQCTRLQ 60 PLAQFDGTRR SCRASLSKRR IRKRPGGSPR GGKRTALYAR CGGGNTLHGS NSDSEGSGGG 120 HGSSDNLRMQ YGPHRHQLPP HPQWYEASGS ASLRSSNSEQ AMTSGSAPAP PSWGGPAAAG 180 AAEQTQRWLA ARQAPPRGAF PSGPVAAAAA SAPPPGPAVG SVLANLSTTD LQRLASLLER 240 LQSPLPQPPL QPQQSAYLAP SLAPLLYRAP LPATGSTAAA QLAQMLAGLG TSAAHVRQAL 300 AGLGPAGALL LQQIDAVSQR ELQQRQQQQE QQLHEAQARL AQLLQAVLAP TASSGQQQQQ 360 QEQLVAPPPA VGTDTPAGTT TDAAAEASTG AATGTSASAA AGNSTSAQPD PVLQQFLGML 420 LSAAQAPAAP QP* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005846796.1 | 0.0 | hypothetical protein CHLNCDRAFT_135325 | ||||
TrEMBL | E1ZHZ6 | 0.0 | E1ZHZ6_CHLVA; Uncharacterized protein | ||||
STRING | XP_005846796.1 | 0.0 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27360.4 | 3e-12 | squamosa promoter-like 11 |
Link Out ? help Back to Top | |
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Entrez Gene | 17354142 |
Publications ? help Back to Top | |||
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