PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_12_00016 | ||||||||
Common Name | CHLNCDRAFT_134630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 25712.5 Da PI: 5.0458 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 40.2 | 7.5e-13 | 13 | 87 | 23 | 97 |
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 arikk++++dedv ++s +Pvl++ka ++f+ + + ae+ r l s i+a ++ + dfl d v IGS.gm_12_00016 13 QARIKKMMQSDEDVGKVSKASPVLIAKALDIFLQSMVDGAARIAESRGARMLTASHIKAHIQGEELLDFLKDAVA 87 48**********************************9999999*****************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 2.0E-13 | 14 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.97E-16 | 14 | 88 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.5E-20 | 14 | 86 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MASKGMKAST NLQARIKKMM QSDEDVGKVS KASPVLIAKA LDIFLQSMVD GAARIAESRG 60 ARMLTASHIK AHIQGEELLD FLKDAVAAVA ELPPAGAEPV KGAKQKRQRA KNSGNEGEAG 120 PSKVRSRGGR GGRGGKGRKG TSDEDAAAVC ERAAPAGNDS AGCVRDEDHA AGDLADADTA 180 QQQQQQHQPE AQQEASAGQG GPTIAPAVPQ QEEGGTGGVE PGAGGGMPLV SVPSFLAAAA 240 VPGAEAEEED YDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-16 | 14 | 76 | 15 | 77 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | KQKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005847021.1 | 1e-179 | hypothetical protein CHLNCDRAFT_134630 | ||||
TrEMBL | E1ZGE1 | 1e-178 | E1ZGE1_CHLVA; Uncharacterized protein | ||||
STRING | XP_005847021.1 | 1e-178 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3343 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 5e-21 | NF-YC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17354259 |
Publications ? help Back to Top | |||
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