PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_11_00402

Common Name

CHLNCDRAFT_134556

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

C3H

Protein Properties

Length: 753aa MW: 75669.8 Da PI: 7.4764

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_11_00402	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	95	111	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +tG C +G++C++aH IGS.gm_11_00402 95 KKTGNCIRGEKCPYAHN 111 79**************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.361	85	113	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.013	85	112	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	85	116	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-5	91	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	118	150	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8	121	144	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MAAAEGGWQG SSGHHGSPDQ HGVEDEHTSP LFQSDDFRLW CMKVRVWLPR APVIPCTKRF 60 VHDWTICPFA HAGEKAVRRD PRLHNYTGIA CPDMKKTGNC IRGEKCPYAH NVFEYWLHPT 120 RYRTQLCNDG PMCRRGICFF AHSLEELRVP ACKPYVSPEA LARASLEAIQ QNPHPLGQQL 180 ANPVAAAQQQ AAMAAMGRPG GGGGGRGGRD SGPSSLAANA MPFVPGTSGG PNGGGGPNGG 240 GGFRYSDNFR GDFRHSGEPA RYSAPGAAGL LANSGSSGDF GSLGEYGSLP SPHFAQQRWT 300 APPQAHGSYP GPAYHGGGGG GGGGGGGSYP PQHQQYGQQA QRYGSMPASA GSGRLSGNRG 360 GGGSSSSFGA GSAPMESIMD MAAAAAAAAN ASAGLRPQHA QPSHPPQHQQ HQQYQQQHQQ 420 QQHAHHQQHH QQQGYHPAPA RAPSPAPHSP SPGPRSFAAV QHPPAQGFGS YSPMADGGDG 480 MPGSSRSVAA PGSVPSVRTS DSHSEEDGAV SPRSQQSGLP ASASGRASPA EPDLAQSLAS 540 LKIAMTQQQL AAAAGSNHEV VITTLHQILK DAMAQQGGPT PGSSFGAGGE PTAAAAAFVA 600 AQLAGGASGG SSAAWAGGSP DNASYSFGSS GASMSAGSQA QFPPSPQAGN VGSQGEAAAA 660 AAAAVAGRDA GGGARASPGQ QQQQDGGSGG AALSSSPGAM ACYQAAMVAA AGGYPGVMLP 720 AAPQRPASPG SPGDAGQAAA ALALEGEDEG NI*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MAAAEGGWQG SSGHHGSPDQ HGVEDEHTSP LFQSDDFRLW CMKVRVWLPR APVIPCTKRF  60
VHDWTICPFA HAGEKAVRRD PRLHNYTGIA CPDMKKTGNC IRGEKCPYAH NVFEYWLHPT  120
RYRTQLCNDG PMCRRGICFF AHSLEELRVP ACKPYVSPEA LARASLEAIQ QNPHPLGQQL  180
ANPVAAAQQQ AAMAAMGRPG GGGGGRGGRD SGPSSLAANA MPFVPGTSGG PNGGGGPNGG  240
GGFRYSDNFR GDFRHSGEPA RYSAPGAAGL LANSGSSGDF GSLGEYGSLP SPHFAQQRWT  300
APPQAHGSYP GPAYHGGGGG GGGGGGGSYP PQHQQYGQQA QRYGSMPASA GSGRLSGNRG  360
GGGSSSSFGA GSAPMESIMD MAAAAAAAAN ASAGLRPQHA QPSHPPQHQQ HQQYQQQHQQ  420
QQHAHHQQHH QQQGYHPAPA RAPSPAPHSP SPGPRSFAAV QHPPAQGFGS YSPMADGGDG  480
MPGSSRSVAA PGSVPSVRTS DSHSEEDGAV SPRSQQSGLP ASASGRASPA EPDLAQSLAS  540
LKIAMTQQQL AAAAGSNHEV VITTLHQILK DAMAQQGGPT PGSSFGAGGE PTAAAAAFVA  600
AQLAGGASGG SSAAWAGGSP DNASYSFGSS GASMSAGSQA QFPPSPQAGN VGSQGEAAAA  660
AAAAVAGRDA GGGARASPGQ QQQQDGGSGG AALSSSPGAM ACYQAAMVAA AGGYPGVMLP  720
AAPQRPASPG SPGDAGQAAA ALALEGEDEG NI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005847520.1	0.0	hypothetical protein CHLNCDRAFT_134556
TrEMBL	E1ZG74	0.0	E1ZG74_CHLVA; Uncharacterized protein
STRING	XP_005847520.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	1e-39	C3H family protein

Link Out ? help Back to Top
Entrez Gene	17354707

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]