PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_10_00281
Common NameCHLNCDRAFT_133990
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family bZIP
Protein Properties Length: 294aa    MW: 30469 Da    PI: 4.6991
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_10_00281genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.13.4e-17147208162
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      e+e kr rrkq+NRe+ArrsR+RK+ae+e+L + vk L +eN++Lk+e  +l  +++ l ++
  IGS.gm_10_00281 147 EREMKRMRRKQSNRESARRSRLRKQAECEQLSRQVKDLASENSRLKEEKMQLLAQIEILNAK 208
                      799*********************************************99998888877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-15144209No hitNo description
SMARTSM003381.9E-13147211IPR004827Basic-leucine zipper domain
PfamPF001703.9E-15147207IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.013149212IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-10150206No hitNo description
CDDcd147027.97E-17152194No hitNo description
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGGFPLPGGE GEGKAEGQGS GEDETEEEEE EEDDGDSSGK EGGRPKRKRA ARASAKKKAA  60
TGDGVVKSNS NAALAMLAGA AATKPPNPAA AAAAAAALQQ NLGELWGTLN GAGAGGMPST  120
SGMDMSKLTS EQQQMLANAS FEGITDEREM KRMRRKQSNR ESARRSRLRK QAECEQLSRQ  180
VKDLASENSR LKEEKMQLLA QIEILNAKLS MSAFPGLHAM GGGDMTKQTA EIQAMAVAMA  240
QTMQGNGGVM MGTGLGIPTL DAKAMEGGDE VAAVPAAMEG AGEQQEQPEQ VSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163169RRSRLRK
2163170RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005847804.10.0hypothetical protein CHLNCDRAFT_133990
TrEMBLE1ZER00.0E1ZER0_CHLVA; Uncharacterized protein
STRINGXP_005847804.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4426911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.19e-20basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]