PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 236aa MW: 25879.7 Da PI: 10.6043 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 239.6 | 2.2e-73 | 40 | 236 | 106 | 301 |
GAGA_bind 106 ksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk..pkekka 164 + ++ +q+ ep ++ +++ + + +++i++a++ ak +k+k++ +++++ k+ + snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 40 NPLQGTQMNPEPGIAVTPIRTIPATTEPKTNINSATKAAKVRKQKNSMKEPNQiaSKVFRV 100 4455555555566666666655555555555655555555555544444443311444445 PP GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkW 225 k++kk ++++ kk+k +s++e ++++k i++ +++ ++D s++P+P CsCtG +r CYkW snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 101 KQAKK-TPSTSKKTKGQSMPEAKREKKIPINIDMDKTDFDFSGVPAPYCSCTGNPRACYKW 160 55555.44444555555556667777779******************************** PP GAGA_bind 226 GnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286 G+GGWqS+CCt+++S yPLP+s++r+g+R+agrKmS+ga+ klL +La+eG+dl +pvDLk snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 161 GAGGWQSSCCTINVSEYPLPMSSTRPGSRMAGRKMSNGAYGKLLLRLATEGHDLTHPVDLK 221 ************************************************************* PP GAGA_bind 287 dhWAkHGtnkfvtir 301 dhWA+HGtnkfv i+ snap_masked-scaffold13569-abinit-gene-0.3-mRNA-1 222 DHWARHGTNKFVIIK 236 ************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 7.6E-68 | 22 | 236 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 7.8E-67 | 64 | 236 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MGTYTNRNPM IPEATAGASV PHFTWFYPGS FMSASKSNSN PLQGTQMNPE PGIAVTPIRT 60 IPATTEPKTN INSATKAAKV RKQKNSMKEP NQIASKVFRV KQAKKTPSTS KKTKGQSMPE 120 AKREKKIPIN IDMDKTDFDF SGVPAPYCSC TGNPRACYKW GAGGWQSSCC TINVSEYPLP 180 MSSTRPGSRM AGRKMSNGAY GKLLLRLATE GHDLTHPVDL KDHWARHGTN KFVIIK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023925955.1 | 1e-170 | protein BASIC PENTACYSTEINE7 | ||||
Refseq | XP_023925956.1 | 1e-170 | protein BASIC PENTACYSTEINE7 | ||||
Refseq | XP_023925957.1 | 1e-170 | protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 4e-65 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A2N9GYJ8 | 1e-154 | A0A2N9GYJ8_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_015308m | 1e-114 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16430 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35550.4 | 2e-64 | basic pentacysteine 7 |