PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold08322-abinit-gene-0.9-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 76aa MW: 8564.71 Da PI: 4.2214

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold08322-abinit-gene-0.9-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	53.8	6.4e-17	29	75	1	48
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 + pGfrF+Ptdeel+++yLkkk+eg + + evi+ev+++++ePwdLp snap_masked-scaffold08322-abinit-gene-0.9-mRNA-1 29 MFPGFRFSPTDEELISYYLKKKLEGYEQCV-EVISEVEMCRHEPWDLP 75 579**********************777.99************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-17	20	76	IPR003441	NAC domain
PROSITE profile	PS51005	19.326	29	76	IPR003441	NAC domain
Pfam	PF02365	1.1E-7	31	72	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MEGTSSSREA LMIGGVSREV EVSIAASTMF PGFRFSPTDE ELISYYLKKK LEGYEQCVEV 60 ISEVEMCRHE PWDLPG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023881532.1	5e-42	NAC domain-containing protein 60
Swissprot	Q9XIN7	2e-21	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	A0A061GVB5	2e-29	A0A061GVB5_THECC; NAC domain-containing protein 74, putative isoform 2
TrEMBL	A0A061GVZ7	3e-29	A0A061GVZ7_THECC; NAC domain protein, IPR003441, putative isoform 1
TrEMBL	A0A061GZN7	5e-29	A0A061GZN7_THECC; NAC domain-containing protein 74, putative isoform 3 (Fragment)
TrEMBL	A0A2N9IRR2	4e-32	A0A2N9IRR2_FAGSY; Uncharacterized protein
STRING	EOY33354	9e-30	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11433	17	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	9e-24	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]