PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold08137-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 496aa    MW: 56048.7 Da    PI: 8.2822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold08137-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.71.3e-41151432127
                                               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyf 60 
                                                       p+G+rF+Pt+eel+ +yL+ k++g +    ++i ev+iy++ePwdLp  +k+k+++++w+f
  snap_masked-scaffold08137-abinit-gene-0.4-mRNA-1  15 PVGYRFQPTEEELLGHYLRLKMQGGNDYDVRAIGEVNIYNYEPWDLPglSKIKSDDQDWFF 75 
                                                       89*********************999655589***************6559999******* PP

                                               NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektd 120
                                                       F+ r+ ky++++r+nr+tk+gyWk t +d++++++ +++++g+kktLvf++gr +kg+kt 
  snap_masked-scaffold08137-abinit-gene-0.4-mRNA-1  76 FCAREIKYPNSNRSNRMTKKGYWKITCQDRDIKARgTKNVIGTKKTLVFHEGRVKKGVKTP 136
                                                       **********************************967778********************* PP

                                               NAM 121 Wvmheyr 127
                                                       W + +y+
  snap_masked-scaffold08137-abinit-gene-0.4-mRNA-1 137 WYIYQYQ 143
                                                       *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-467162IPR003441NAC domain
PROSITE profilePS5100547.9914162IPR003441NAC domain
PfamPF023651.1E-2015143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MTSMTYSETG LESIPVGYRF QPTEEELLGH YLRLKMQGGN DYDVRAIGEV NIYNYEPWDL  60
PGLSKIKSDD QDWFFFCARE IKYPNSNRSN RMTKKGYWKI TCQDRDIKAR GTKNVIGTKK  120
TLVFHEGRVK KGVKTPWYIY QYQPVTFHPH EQAFVLCRLF KKPDVKINKA PCDDGDVSRY  180
AASDFEDQVP GHTIPEIHEF NQEDADLASL LQSPHQDYDF ASLLQFKEYN QPERPIVDLT  240
FTGGFKPDNN FANEQEEIQQ FNDSRAPESS IKIYYDGGPS SDSDTDTAQA PHQQMHIIDS  300
GTASLSNHGQ YKGKRNGVVL DAFSVDSAAD IRHVLSTQSQ GQRSPPSIGT LKLQNQPRSR  360
HSVEQRAAPR KFHLKNPSLK VESIEKAKDA SRLSITTNLP QKEKSIMESE KEQKMAQGTN  420
ADNSPKLKKV RSAGSDRKGS LIFQETSQKG HESTPRSVYF VKILIAIDNS PSEGFSYKMH  480
LSVTEPKPSK QGGAPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-311316216165NO APICAL MERISTEM PROTEIN
1ut4_B6e-311316216165NO APICAL MERISTEM PROTEIN
1ut7_A6e-311316216165NO APICAL MERISTEM PROTEIN
1ut7_B6e-311316216165NO APICAL MERISTEM PROTEIN
3swm_A6e-311316219168NAC domain-containing protein 19
3swm_B6e-311316219168NAC domain-containing protein 19
3swm_C6e-311316219168NAC domain-containing protein 19
3swm_D6e-311316219168NAC domain-containing protein 19
3swp_A6e-311316219168NAC domain-containing protein 19
3swp_B6e-311316219168NAC domain-containing protein 19
3swp_C6e-311316219168NAC domain-containing protein 19
3swp_D6e-311316219168NAC domain-containing protein 19
4dul_A6e-311316216165NAC domain-containing protein 19
4dul_B6e-311316216165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925291.10.0NAC domain-containing protein 96-like
TrEMBLA0A2N9H8V11e-121A0A2N9H8V1_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.24e-56NAC transcription factor-like 9