PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold04512-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 679aa    MW: 73439.5 Da    PI: 7.4291
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold04512-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093784102254
                                                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                       ++yp+ +++  LAk++gLt +qV++WF N R +
  snap_masked-scaffold04512-abinit-gene-0.7-mRNA-1 378 HPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 410
                                                       89*****************************88 PP
2BELL94.87.6e-312523081672
                                              BELL  16 leeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                                       +  Vd+rY+qy++q+q+vissFe++aglgsa+ Yt+lAl++iS++FrcLkdai++qi
  snap_masked-scaffold04512-abinit-gene-0.7-mRNA-1 252 VRLVDQRYRQYHHQMQIVISSFEQAAGLGSARTYTALALQTISKQFRCLKDAITGQI 308
                                                       5679****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.7E-40190306IPR006563POX domain
PfamPF075269.1E-6195235IPR006563POX domain
PfamPF075263.0E-25252305IPR006563POX domain
PROSITE profilePS5007112.05351414IPR001356Homeobox domain
SMARTSM003897.8E-9354418IPR001356Homeobox domain
CDDcd000867.69E-12354415No hitNo description
SuperFamilySSF466898.98E-17355420IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28357420IPR009057Homeodomain-like
PfamPF059203.6E-18371410IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MATYFHGNSE IQAADGLQTL VLMNRGYVQY SDTPPPPPQS QSNNFVFLNS AAAAAAANSL  60
NLPHAPPPHT QQFVGIPLSN AGSAGDPASQ SMHAAHHEFS ALHGFAPRMQ YNLWNSIDPN  120
TAARETPRAQ QGLSLSLSSQ QPTGGGYGSF RSDRDVPPQA QGPAISGEEH MRVSAGGSPS  180
SASGVTNGVS GIQSVLLSSK YLKAAQDLLD EVVNVGNGIK SEISKKVNGK VIGESSVAVS  240
GDGSVGGEGS VVRLVDQRYR QYHHQMQIVI SSFEQAAGLG SARTYTALAL QTISKQFRCL  300
KDAITGQIRA ANKSLGEEDC LGGKIEGSRL KYVDHHLRQQ RALQQLGMIQ HNAWRPQRGL  360
PERSVSVLRA WLFDHFLHPY PKDSDKHMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY  420
LEELKEQEQN GSEDKTSKSN DDSASKSSAP QEKSSATENQ TRSFNSKQEN STNQNGAAIP  480
ISKASTSPVG GNMRNHSGFS LIGSSELEGI TQGSPKKPRS NDMLHSPNSV PSINMDVNMD  540
IKPNEANNEQ VSMKFGDERQ SRDGYSFMGS QTNFIGGFGQ YPIGEIGRFD AEQFAPRFSG  600
NGVSLTLGLP HCENLSLSGT HHTFLPNQSI QLGRRVDIGE PNEFGAINTS TPHSSAAYES  660
INIQNPKRFA AQLLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16360418563Homeobox protein Meis2
3k2a_B8e-16360418563Homeobox protein Meis2
4xrs_A6e-16360417158Homeobox protein Meis1
4xrs_B6e-16360417158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920159.10.0BEL1-like homeodomain protein 1
RefseqXP_023920160.10.0BEL1-like homeodomain protein 1
RefseqXP_023920161.10.0BEL1-like homeodomain protein 1
RefseqXP_023920162.10.0BEL1-like homeodomain protein 1
RefseqXP_023920164.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-173BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2N9GIG50.0A0A2N9GIG5_FAGSY; Uncharacterized protein
STRINGXP_007162972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-123BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]