PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold02209-abinit-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 331aa    MW: 37371.4 Da    PI: 6.9504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold02209-abinit-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS25.21.8e-082142702685
                                               GRAS  26 rlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                                        +++ ++sp gd +qRla+yf++AL+arla++   +y  ++++ ts   +++ l+a +lf 
  snap_masked-scaffold02209-abinit-gene-0.26-mRNA-1 214 KIRLHSSPLGDRNQRLAHYFANALEARLAGTRIPVYTPVESNGTS---VADCLKAIQLFM 270
                                                        68899*************************888888666666665...899999988885 PP
2GRAS40.93.1e-13266330102162
                                               GRAS 102 Ileavege.ervH.iiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157
                                                        I   + ++ ++ H i Df+i +GlQWp+L+q L+  p+gp ++RiTg++ p++g   +e+
  snap_masked-scaffold02209-abinit-gene-0.26-mRNA-1 266 IQLFMTKHrRQQHfIFDFGILYGLQWPCLIQRLSIIPGGPLKIRITGIELPQPGfrPAER 325
                                                        5555555533335377************************************99999999 PP

                                               GRAS 158 leetg 162
                                                        +eetg
  snap_masked-scaffold02209-abinit-gene-0.26-mRNA-1 326 VEETG 330
                                                        99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.171162331IPR005202Transcription factor GRAS
PfamPF035141.1E-10266330IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLMEEDSEVR PCVLQDSLAL QAAEKSFYEV LGREDHPLTN QDNECPDALV TGSSRTHISN  60
SYYVADNLIN ETHSFAQVKG GMGIAVKSIR HGKYEVFDTE SIPPLPPKYT QGMVGKQEKS  120
YTSPSGSRGN KNHQREDTDN LEEGRSKKHS LVDDGEVDSK LLEKFDKILH CPGGEARLHQ  180
VLFINLEETE EEKSCSTTII QKELMVKQRF PRMKIRLHSS PLGDRNQRLA HYFANALEAR  240
LAGTRIPVYT PVESNGTSVA DCLKAIQLFM TKHRRQQHFI FDFGILYGLQ WPCLIQRLSI  300
IPGGPLKIRI TGIELPQPGF RPAERVEETG R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897036.11e-157scarecrow-like protein 14
TrEMBLA0A2N9HNJ87e-83A0A2N9HNJ8_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.12e-43GRAS family protein