PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00795-abinit-gene-0.46-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 429aa    MW: 47095.1 Da    PI: 6.1549
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00795-abinit-gene-0.46-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2284.5e-70150421111374
                                               GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg.....skeeleetge 163
                                                        rvHi+D+di++G+QW++L+qaL sR+egpp  +lRiT++ +  +g     s  +++etg+
  snap_masked-scaffold00795-abinit-gene-0.46-mRNA-1 150 RVHIVDYDIMEGIQWASLMQALVSRKEGPPgpHLRITAITRGGTGssgrrSIGTVQETGR 209
                                                        8*************************998777********97777888888999****** PP

                                               GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223
                                                        rL  fA+++g pf+f+    ++ e+++++ L++ +gE+l+Vn++l+l ++  +  ++   
  snap_masked-scaffold00795-abinit-gene-0.46-mRNA-1 210 RLIAFAASIGQPFSFHQCRLDSDETFRPSVLKLVRGESLVVNCMLNLPHFNFRAPDS--- 266
                                                        *****************9999*****************************8555554... PP

                                               GRAS 224 rdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklprese 280
                                                         +++L+  ksl+P++v+ v +e+ +   ++++Fl rf+++l++ysa++dslea++p +s+
  snap_masked-scaffold00795-abinit-gene-0.46-mRNA-1 267 VSSFLSGAKSLNPRIVTPVKEELGTgpvGKPDFLGRFMDTLHHYSAVYDSLEAGFPMQSR 326
                                                        459*******************766445899***************************** PP

                                               GRAS 281 erikvErellgreivnvvacegaerrerhet.lekWrerleeaGFkpvplsekaakqakl 339
                                                        +r+ vEr++lg++i+  +a    +r++ +et  ++W ++l +aG+kpv++s+ + +qakl
  snap_masked-scaffold00795-abinit-gene-0.46-mRNA-1 327 ARALVERVFLGPRISGSLARIYCNREKPEETqTSSWGDWLATAGLKPVTISSANHCQAKL 386
                                                        **********************9988876652679************************* PP

                                               GRAS 340 llrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                                        ll+ ++ dgyrvee  ++ +vlg k r+L+s+S+W+
  snap_masked-scaffold00795-abinit-gene-0.46-mRNA-1 387 LLSLFN-DGYRVEEVaNNKIVLGRKLRRLLSASVWT 421
                                                        ******.******76488999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.6E-67150421IPR005202Transcription factor GRAS
PROSITE profilePS5098532.035150401IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAIAMDHVSL EVDHSGYGCD WQNRASVVDW ESFQLQGHDD FQDLIESMME DGGLVLAPGG  60
AVEIEGSHEE SHSNSNSNSN SSESTDMVVV DEENDEDYKG LKLVHLLIAA AEALNGSKSR  120
DLAGVILVRL KEMVRTFHGE PSYPRSCGIR VHIVDYDIME GIQWASLMQA LVSRKEGPPG  180
PHLRITAITR GGTGSSGRRS IGTVQETGRR LIAFAASIGQ PFSFHQCRLD SDETFRPSVL  240
KLVRGESLVV NCMLNLPHFN FRAPDSVSSF LSGAKSLNPR IVTPVKEELG TGPVGKPDFL  300
GRFMDTLHHY SAVYDSLEAG FPMQSRARAL VERVFLGPRI SGSLARIYCN REKPEETQTS  360
SWGDWLATAG LKPVTISSAN HCQAKLLLSL FNDGYRVEEV ANNKIVLGRK LRRLLSASVW  420
TTTSSSADY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-31151424130382Protein SCARECROW
5b3h_A1e-31151424129381Protein SCARECROW
5b3h_D1e-31151424129381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922268.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-130NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2N9IWC61e-164A0A2N9IWC6_FAGSY; Uncharacterized protein
STRINGXP_006472746.11e-152(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-96GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]