PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 772aa    MW: 86942.9 Da    PI: 5.1913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.93.4e-1063957691373
                                               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 
                                                        l++lL+ cA+avs+gd + a++lL++++++++p gd  qRla++f+++L+arla++  ++
  snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 395 LRNLLILCAQAVSAGDVRTANELLKQVRDHSTPFGDGSQRLAHFFANGLEARLAGTKVGT 454
                                                        6899**************************************************954444 PP

                                               GRAS  61 ykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                                                            ++  +++ + +e l+a+++   ++P+ +++ +   + Il+a+e+++++H++Df+i+
  snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 455 QIFYTSLVSKRVSATELLKAYRVHLSACPFKRITLFFGMRRILRAAEKATTLHVVDFGIQ 514
                                                        433445555555699********************************************* PP

                                               GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                                                        +G+QWp L+q L++Rpegpp+lRiTgv+ p++g   +e++eetg+rL+k++++++vpfe+
  snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 515 YGFQWPILIQFLSKRPEGPPKLRITGVDLPQPGfrPTESIEETGRRLEKYCKRFNVPFEY 574
                                                        ********************************9*9************************* PP

                                               GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                                        n+++++++e++++eeL+++++E+laV ++++ ++llde+ +  s+rd++L+l+++++P++
  snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 575 NAIASQNWETIRMEELKIERNEVLAVACAFRTKNLLDETIEGISPRDAFLNLIRRMKPDI 634
                                                        ***999****************************************************** PP

                                               GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                                                        +v +  + + n++ F +rf eal +ysal+d+++++++r++ er + Ere+ gre++nv+
  snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 635 FVNSIVNGSFNAPFFHTRFREALFHYSALYDMFDVTISRNNPERLMFEREFYGREAMNVI 694
                                                        ************************************************************ PP

                                               GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                                                        aceg er+er et+++ + r+++aGFk +pl+++  +  ++ ++  + + ++++e++++l
  snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 695 ACEGLERVERPETYKQCQVRISRAGFKLLPLDQEQISMFRAKMKAWYHKDFMLDEDNHWL 754
                                                        ***********************************************888********** PP

                                               GRAS 359 vlgWkdrpLvsvSaW 373
                                                        ++gWk+r +++ S+W
  snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 755 LQGWKGRIVYASSSW 769
                                                        *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.765369750IPR005202Transcription factor GRAS
PfamPF035141.2E-103395769IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MDSSSNFLDG FTTMSPNSED NCSNLINEYT FNQLSAPTSD LNFLGSPNLS SDSDLGPAGF  60
ELSIPTAVGL EGQPYDAPHV AIPPMLQADS TSSPYDSDFS ETVLKYINQI LMEENIENKP  120
CMFYDPLGLK DTEKSFYDAL GQNYPPLPNL NSVDSPVLSS SSCDYGTSST SGSSTVNDSQ  180
GLSDLGEHNY QSSFSPPPIL GEYNVVQSNF KPTDESQFFG NLSNGSVNYL GYGLEVMAQN  240
IFTNRESMLQ FRRGLEEASK FLPKSNNLVI DLESNVVSSS KSKGEDLKVE SLVVKSEKEN  300
YLPDGSRGRK NHAREEIELE EGRSNKQTAV YVEETELSEM FDKVLLCTEA PAAMYGDNCE  360
HLQNDVSKAF LETQGGNGGK GSRNKKQVKK ETVDLRNLLI LCAQAVSAGD VRTANELLKQ  420
VRDHSTPFGD GSQRLAHFFA NGLEARLAGT KVGTQIFYTS LVSKRVSATE LLKAYRVHLS  480
ACPFKRITLF FGMRRILRAA EKATTLHVVD FGIQYGFQWP ILIQFLSKRP EGPPKLRITG  540
VDLPQPGFRP TESIEETGRR LEKYCKRFNV PFEYNAIASQ NWETIRMEEL KIERNEVLAV  600
ACAFRTKNLL DETIEGISPR DAFLNLIRRM KPDIFVNSIV NGSFNAPFFH TRFREALFHY  660
SALYDMFDVT ISRNNPERLM FEREFYGREA MNVIACEGLE RVERPETYKQ CQVRISRAGF  720
KLLPLDQEQI SMFRAKMKAW YHKDFMLDED NHWLLQGWKG RIVYASSSWV PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4540277125379Protein SCARECROW
5b3h_D3e-4540277125379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9004800.0JN900480.1 Quercus robur scarecrow-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904390.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLH9AWX50.0H9AWX5_QUERO; Scarecrow-like protein 1
STRINGXP_009364376.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]