PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold22101-snap-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 298aa    MW: 34409.5 Da    PI: 6.1083
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold22101-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.8e-141461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+W+ eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
  maker-scaffold22101-snap-gene-0.3-mRNA-1 14 KGAWSVEEDNKLRSYVQRFGHWNWRELPKIAGLSRCGKSCRLRWMNYL 61
                                              79******************99************************97 PP
2Myb_DNA-binding39.71.1e-1267145147
                                               TSSS-HHHHHHHHHHHHHTTTT.................................-HHHHHHHHTTTS- CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.................................tWktIartmgkgRt 36 
                                               rg+ T+eE++ +++++++lG++                                  W+ Ia+ ++ gR+
  maker-scaffold22101-snap-gene-0.3-mRNA-1  67 RGNYTEEEELMIIKLHEELGNKyrlktsrffnknldehnfiykitpsfhalflvcIWSMIAASLP-GRS 134
                                               899**************************************************************.*** PP

                                               HHHHHHHHHHH CS
                           Myb_DNA-binding  37 lkqcksrwqky 47 
                                               ++ +k++w+ +
  maker-scaffold22101-snap-gene-0.3-mRNA-1 135 DNGIKNHWHAH 145
                                               ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.514965IPR017930Myb domain
SMARTSM007171.4E-101363IPR001005SANT/Myb domain
PfamPF002493.6E-131461IPR001005SANT/Myb domain
SuperFamilySSF466892.78E-211589IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-211568IPR009057Homeodomain-like
CDDcd001672.21E-81661No hitNo description
PROSITE profilePS500908.62962146IPR017877Myb-like domain
SMARTSM007174.2E-866148IPR001005SANT/Myb domain
PfamPF002498.7E-967145IPR001005SANT/Myb domain
CDDcd001672.02E-469146No hitNo description
Gene3DG3DSA:1.10.10.604.2E-1969149IPR009057Homeodomain-like
SuperFamilySSF466895.98E-7123157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVRAPFYDKN GLKKGAWSVE EDNKLRSYVQ RFGHWNWREL PKIAGLSRCG KSCRLRWMNY  60
LQPDVKRGNY TEEEELMIIK LHEELGNKYR LKTSRFFNKN LDEHNFIYKI TPSFHALFLV  120
CIWSMIAASL PGRSDNGIKN HWHAHLKKRT KKNPTTSKMK ALSNEAYQHD ADIARKTETD  180
GSVSSSPSYQ VQESSQLPLE TSCSEFSNLS IDNAPLSSIT AEDSLATLET LEQSFSDFWT  240
EPFILDNTYI QNNYLESLAD GGFSASQSCY YEGIDSIYEA MQDVENYQRI NEDPYLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-201215025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881680.11e-174transcription factor MYB13-like
TrEMBLA0A2N9J0V51e-123A0A2N9J0V5_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s14130.16e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-47myb domain protein 15