PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13697-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 311aa    MW: 35335.5 Da    PI: 6.7019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13697-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-161461148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g+WT+eEd++l   ++++G  +W + +r  g+ R++k+c++rw +yl
  maker-scaffold13697-augustus-gene-0.2-mRNA-1 14 KGAWTPEEDDKLRSFIHRHGHSNWCKLPRLAGLSRCGKSCRLRWVNYL 61
                                                  79********************************************97 PP
2Myb_DNA-binding51.22.9e-1667112148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                   rg++T+eE++l+ +++++ G++ W+ Ia+ +  gRt++++k++w+++l
  maker-scaffold13697-augustus-gene-0.2-mRNA-1  67 RGNFTKEEEDLIFKLHEEAGNK-WSMIAKNLS-GRTDNEIKNHWHTHL 112
                                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.887961IPR017930Myb domain
SuperFamilySSF466891.76E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221568IPR009057Homeodomain-like
CDDcd001672.87E-101661No hitNo description
PROSITE profilePS5129424.77362116IPR017930Myb domain
SMARTSM007173.5E-1566114IPR001005SANT/Myb domain
PfamPF002495.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2569116IPR009057Homeodomain-like
CDDcd001671.62E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVRGPFYDKN GLKKGAWTPE EDDKLRSFIH RHGHSNWCKL PRLAGLSRCG KSCRLRWVNY  60
LQPGVKRGNF TKEEEDLIFK LHEEAGNKWS MIAKNLSGRT DNEIKNHWHT HLKKHVKEIS  120
KTSQRKAKKI KESESECLRA SCSSNQSLES SPLTTELSSS KLSSLSCDNS TVTGTNWAEE  180
DSLSSLEISQ NSFENMHLKK DSKKTLKTES LHANDPFHHI LESSPLSPEV SFAKFSSLGS  240
DHSSIPGINW IEEDALASFE TFDAAFGDFW TKPFVADNMY IPDELPISPY ISYYDDGTDL  300
FDQVMQELPK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891299.10.0transcription factor WER-like
RefseqXP_023891300.10.0transcription factor WER-like
TrEMBLA0A2N9EJE93e-89A0A2N9EJE9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-55myb domain protein 15