PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11127-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 326aa    MW: 36681.4 Da    PI: 6.3199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11127-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.94.2e-23142202259
                                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                                   dDg++WrKYGqK++ +++fpr+YYrCt++   gC+++k+v+r ++dp     tY g+H+++
  maker-scaffold11127-augustus-gene-0.5-mRNA-1 142 DDGHAWRKYGQKVILNAKFPRHYYRCTHKhdqGCQATKHVQRIHDDPPKYRSTYIGHHTCR 202
                                                   8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-24127202IPR003657WRKY domain
PROSITE profilePS5081121.356136199IPR003657WRKY domain
SuperFamilySSF1182902.88E-23137202IPR003657WRKY domain
SMARTSM007748.1E-35141203IPR003657WRKY domain
PfamPF031061.3E-23142202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MECTWPESLP SSKKKAIEEL VEGRDIANQL RSLLSKSAGD NNNNNNNNNN NNNKNMAAPA  60
EDLVVKILKS FTNSLLILKN AEADEVSQIQ ANTHVTNWNG GPKSSESSEE SSRSTTHKDR  120
RGCYKRRKTA QSWTKESPNL TDDGHAWRKY GQKVILNAKF PRHYYRCTHK HDQGCQATKH  180
VQRIHDDPPK YRSTYIGHHT CRNFLKVPEL FLDSSPPSDS SMLLSFDNST ITSKEDNPFF  240
SPFQSSIKQE YKEEIPSDHT DIAHIQSSSS DYLVSPDRTV AFESLGHMSV LSSTLDSDNG  300
DVISGDMMGS VDFSDDFLID DFSLQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-23142202969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923322.10.0probable WRKY transcription factor 70
TrEMBLA0A2N9FTY71e-158A0A2N9FTY7_FAGSY; Uncharacterized protein
STRINGEOY044381e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-39WRKY DNA-binding protein 70