PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10447-augustus-gene-0.11-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 518aa    MW: 54487.2 Da    PI: 7.8657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10447-augustus-gene-0.11-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-1091135144
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                                                    r++W+++Ed+ l+ av++ G g+W+ I r     +Rt+ q+  rw
  maker-scaffold10447-augustus-gene-0.11-mRNA-2  91 RKPWSEDEDLELIAAVQKCGEGNWANILRGDFkGNRTATQLSQRW 135
                                                    789************************98422359***9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-1288140IPR009057Homeodomain-like
PROSITE profilePS5129414.06588143IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-1388138IPR009057Homeodomain-like
SMARTSM007176.8E-1090141IPR001005SANT/Myb domain
PfamPF002493.1E-891135IPR001005SANT/Myb domain
CDDcd116602.54E-1492140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MMVLIASGLP SDTSLPTSSI VEAPLTINIP SGSSSRVSPS ENSEATCSMQ GMNITVPVSV  60
QKQPLPSAAA PHEVLDANGS ANGSIPLRRK RKPWSEDEDL ELIAAVQKCG EGNWANILRG  120
DFKGNRTATQ LSQRWAIIRK RRGKLNVGTN PSGSQLSEER RAAHHAISLA LMPVKSLTAA  180
RPAGTSTTSN SVLPTTTAEA VKIGSSSLQA KGQSQQGPVP KKSSPVGSLG STEKSRVSAK  240
KPLTKPGICS DSALRETAVA AGARIASPSD VASFIKATQA KNAVHIKPTG VSSTKLPMPR  300
GVSTQIETQT NVRYVGTGLE AASSSSHPAV TVIPIASHSG SVKAVSPTIQ HSPSTFATSL  360
KMSSEQTNIV SSTLPPEVLP KQEVKTAEEI KACASGNAPK EQVQEDKVLS SDTETVCKIQ  420
ITDIKNPNSS LNMKTDDSAE GAVVDDQAET RQNANENEMM SSPVRGENQS APEVNYENHS  480
ANEKQANLPS MIEDECGEKQ EVLIKIEAGN EIEGEKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692LRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910778.10.0uncharacterized protein LOC112022415
TrEMBLA0A2N9FA760.0A0A2N9FA76_FAGSY; Uncharacterized protein
STRINGXP_010086659.11e-131(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-39MYB_related family protein