PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09202-snap-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 676aa    MW: 74988.5 Da    PI: 9.2684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09202-snap-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07579628147
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                                r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  maker-scaffold09202-snap-gene-0.11-mRNA-1 579 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 628
                                                678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.287574633IPR017930Myb domain
SMARTSM007171.2E-7578631IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-10579629IPR009057Homeodomain-like
SuperFamilySSF466893.42E-15580661IPR009057Homeodomain-like
CDDcd116605.81E-17580630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MVLQRRLEYG FDGFQVPVVP RASRSVRGRG PIRKKCDDNQ IHAFEILASV AGNILQESES  60
SVQSNAAGVK DQNHIFYTNS KGEREDEGRS IKKDPCEGGS FDEKSFACVP GFQGHHKSYK  120
LNEFCQAHDN ISHKVGSASN AYDHSEVTCS AEKLATISRK NNCGYSSSRV VGGPPYFGDV  180
YEGKVGAILE SKLEDGPYRS RRGIDQSLTV AGCSEDQMEL EREPLALVDS ESDVKVTLSR  240
DCVNFVPFPR HFDNIKVVNR DDDENSVGCT QTSTITKAYR SPPDIQQRRM KKLFPSRHWR  300
KSQKLKGRDG KKNPIYCNGR NFHIDERSQN IYPFKKRKFF NQSPISASDG GLHHEGIINF  360
PNKRINGDNH SAAFGASSSV ASQQVPHESK GCDVKFSIKS FKVPELFIEI PATATVGSLK  420
RTVMEAVTAV LGDGLHVGIL LQGKEIRDDN KSLLQTGISQ VQKRHSLGFI LEPGHTQITP  480
PACTEHPSME SGGKPRRHLA PLTLQPGASY ASPDRQLLSL GGSVERDLNI VPSLADSSTG  540
NAMPEAQALV AVPATSMEPL AVVPFDQKSH PEFVRRRIRR PFSVSEVEAL VQAVEKLGTG  600
RWRDVKLRAF DSAKHRTYVD LKDKWKTLVH TARISPHQRR GEPVPQELLD RVLAAHAYWS  660
QHQARQQLKT AEALCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-515646741112Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889881.10.0telomere repeat-binding protein 5-like
TrEMBLA0A2N9J2770.0A0A2N9J277_FAGSY; Uncharacterized protein
STRINGXP_009341748.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-104TRF-like 2