PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08760-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 83aa    MW: 9596.77 Da    PI: 6.6774
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08760-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.84.9e-261978261
                                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
                                  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61
                                                  Fl+k+y++++d+++++++sw++ g+sfvv+d+++f++++Lpk Fkh+nf+SFvRQLn+++
  maker-scaffold08760-augustus-gene-0.9-mRNA-1 19 FLTKTYDMVDDPTTNHIVSWNRGGTSFVVWDPHSFSTNLLPKQFKHNNFSSFVRQLNTFD 78
                                                  9********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-281378IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-211583IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-231778IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-151942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-221978IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-155769IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-157082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MMPPPQLMEG LHDTGSPPFL TKTYDMVDDP TTNHIVSWNR GGTSFVVWDP HSFSTNLLPK  60
QFKHNNFSSF VRQLNTFDTE HFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-171477265HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-171477265HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026101.11e-43PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9M1V54e-38HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLB9GSI72e-41B9GSI7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04900.16e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.12e-40HSF family protein