PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08043-augustus-gene-0.8-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28836.1 Da PI: 4.9115 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.1 | 3.3e-44 | 5 | 138 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekew 58 ppGfrF Pt+eelv++yL++k+eg + ++++i+ vdiy+++Pw+Lp+ ++++ ++w maker-scaffold08043-augustus-gene-0.8-mRNA-1 5 PPGFRFYPTEEELVSFYLHNKLEGARedlnRVMDRIIPVVDIYDSKPWELPQfsgdLCHGDPEQW 69 9***********************99666433445799*************656764455777** PP NAM 59 yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123 +fF++r++++a+g r++r t++gyWkatg+ + v+s++++ +glk+t+vfy+grap+g+kt+W m maker-scaffold08043-augustus-gene-0.8-mRNA-1 70 FFFIPRQESEARGGRPRRLTQTGYWKATGSPNYVYSSNNRIIGLKRTMVFYNGRAPNGSKTEWKM 134 ***************************************************************** PP NAM 124 heyr 127 +ey+ maker-scaffold08043-augustus-gene-0.8-mRNA-1 135 NEYK 138 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-48 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.088 | 4 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-23 | 5 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEDFPPGFRF YPTEEELVSF YLHNKLEGAR EDLNRVMDRI IPVVDIYDSK PWELPQFSGD 60 LCHGDPEQWF FFIPRQESEA RGGRPRRLTQ TGYWKATGSP NYVYSSNNRI IGLKRTMVFY 120 NGRAPNGSKT EWKMNEYKAI DGEVPASTSA TPTLRQEFSL CRVYKKSKCL RAFDRRPPGV 180 IVNEPAAQQV PQGDEATPSR LNPSLTERIS SPDSSSSGDQ GQLSQPGEST GNMAVDNETF 240 WDFEQLNWFQ GLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-33 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-33 | 4 | 166 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-33 | 4 | 166 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-33 | 4 | 166 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023884559.1 | 1e-179 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-79 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2I4HD09 | 1e-132 | A0A2I4HD09_JUGRE; NAC domain-containing protein 90-like | ||||
STRING | VIT_08s0007g02940.t01 | 1e-114 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-79 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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