PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06551-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 290aa    MW: 32355.2 Da    PI: 6.3031
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06551-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-072961132
                                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                                                  +g+W++eEd  l+++ +q+G+g +W + +++ g
  maker-scaffold06551-augustus-gene-0.9-mRNA-1 29 KGPWSPEEDATLKRYLEQHGTGgNWIALPHKAG 61
                                                  79********************9*988777766 PP
2Myb_DNA-binding23.31.5e-07991202446
                                                   HHHHHHHHTTTS-HHHHHHHHHH CS
                               Myb_DNA-binding  24 WktIartmgkgRtlkqcksrwqk 46 
                                                   W+ Ia+ ++ gRt++++k++w++
  maker-scaffold06551-augustus-gene-0.9-mRNA-1  99 WSVIASQLP-GRTDNDIKNYWNT 120
                                                   *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-212050IPR009057Homeodomain-like
PROSITE profilePS500908.9224122IPR017877Myb-like domain
SuperFamilySSF466895.43E-1026118IPR009057Homeodomain-like
SMARTSM007176.8E-1228124IPR001005SANT/Myb domain
PfamPF002495.2E-62959IPR001005SANT/Myb domain
CDDcd001672.25E-731122No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2198127IPR009057Homeodomain-like
PfamPF002491.7E-599120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSRKNAISFT AITLAMGRAP CCDKANVKKG PWSPEEDATL KRYLEQHGTG GNWIALPHKA  60
GLFPAEHYIA EMAELSQAGY QAWRFYRGRR QHYLHSLWWS VIASQLPGRT DNDIKNYWNT  120
KLKKKLLAAG NACPKSATTN RSPDETSNGI SHLNLVEISA SIPKAENYDY GSSSCFYTNS  180
NTLMRTPLVE ANNMENCDLD CIILDPSQFH VSRPMQVPDF RTSGSESYNT ITTSSQDVVG  240
LSPSSTLALE NNYSLLSCNG GVNDDGLLMD FQFESHDDDL LDGFVFRKIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898508.11e-160transcription factor MYB36-like
TrEMBLA0A2N9IKV51e-117A0A2N9IKV5_FAGSY; Uncharacterized protein
STRINGXP_008337621.11e-61(Malus domestica)
STRINGXP_008352348.11e-61(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-35myb domain protein 84