PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05705-snap-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YC
Protein Properties Length: 112aa    MW: 13127.5 Da    PI: 9.7294
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05705-snap-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.57.1e-14501071774
                                      NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74 
                                                 ++++P arikki++aded+ +i+  +P l+ska elf+ +l  +++  + +   +t+
  maker-scaffold05705-snap-gene-0.17-mRNA-1  50 LDTRFPAARIKKIMQADEDIGKIAMAVPLLVSKALELFLQDLCAQTYEITLKRGAKTM 107
                                                3689**************************************9999887777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-2347112IPR009072Histone-fold
SuperFamilySSF471131.57E-1353112IPR009072Histone-fold
PfamPF008083.9E-1753112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
FCCYCFYLRL YKQNQKIQRD TDTERYREIL GIFFSLSLRV PSLDNMRKKL DTRFPAARIK  60
KIMQADEDIG KIAMAVPLLV SKALELFLQD LCAQTYEITL KRGAKTMNSL HL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-2143112170Transcription Regulator NC2 alpha chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896354.13e-39dr1-associated corepressor-like
SwissprotA0JPP15e-20NC2A_RAT; Dr1-associated corepressor
SwissprotQ149195e-20NC2A_HUMAN; Dr1-associated corepressor
SwissprotQ2YDP35e-20NC2A_BOVIN; Dr1-associated corepressor
SwissprotQ9D6N56e-20NC2A_MOUSE; Dr1-associated corepressor
TrEMBLA0A0B2PUJ12e-36A0A0B2PUJ1_GLYSO; Dr1-associated corepressor
TrEMBLA0A2I4FPZ82e-36A0A2I4FPZ8_JUGRE; dr1-associated corepressor-like isoform X4
STRINGGLYMA14G04321.12e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-37nuclear factor Y, subunit C11